MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv0887c · 36 genes shown · anchor sigI · open gene page → · ← back to 1 hop

Evidence: Min score 0
Rv0887c (family_assigned) — VOC family protein Rv0887c Rv1931c (family_assigned) — transcriptional regulator Rv1931c Rv1190 (requalified) — alpha/beta fold hydrolase Rv1190 Rv1725c (family_assigned) — winged helix-turn-helix transcriptional regulator Rv1725c sigI (requalified) — RNA polymerase sigma factor SigI sigI virS (family_assigned) — AraC family transcriptional regulator virS Rv2488c (family_assigned) — LuxR family transcriptional regulator Rv2488c Rv1674c (family_assigned) — metalloregulator ArsR/SmtB family transcription fa Rv1674c Rv0494 (family_assigned) — HTH-type transcriptional regulator Rv0494 cmr (family_assigned) — HTH-type transcriptional regulator Cmr cmr kdpE (requalified) — two-component system response regulator KdpE kdpE embR (requalified) — response regulator transcription factor EmbR embR Rv3736 (family_assigned) — AraC family transcriptional regulator Rv3736 Rv1930c (requalified) — glutamine amidotransferase Rv1930c Rv3167c (family_assigned) — TetR/AcrR family transcriptional regulator Rv3167c Rv1724c (dark) — hypothetical protein Rv1724c Rv3055 (family_assigned) — helix-turn-helix domain-containing protein Rv3055 sigJ (family_assigned) — sigma-70 family RNA polymerase sigma factor SigJ sigJ Rv1359 (family_assigned) — transcriptional regulator Rv1359 nadR (requalified) — nicotinamide-nucleotide adenylyltransferase nadR Rv1773c (family_assigned) — IclR family transcriptional regulator Rv1773c Rv0792c (family_assigned) — GntR family transcriptional regulator Rv0792c tcrA (family_assigned) — two component DNA binding transcriptional regulato tcrA Rv2282c (family_assigned) — LysR family transcriptional regulator Rv2282c kdpD (requalified) — sensor histidine kinase KdpD kdpD trcR (requalified) — two-component system response regulator TrcR trcR trcS (family_assigned) — HAMP domain-containing sensor histidine kinase trcS kdpA (family_assigned) — potassium-transporting ATPase subunit KdpA kdpA Rv0600c (requalified) — two component sensor kinase HK1 Rv0600c Rv0894 (family_assigned) — hypothetical protein Rv0894 iniR (family_assigned) — isoniazid response ATPase/transcriptional regulato iniR Rv3263 (requalified) — class I SAM-dependent methyltransferase Rv3263 mce3R (family_assigned) — TetR family transcriptional regulator Mce3R mce3R mftR (family_assigned) — mycofactocin system transcriptional regulator mftR Rv1985c (family_assigned) — ArgP/LysG family DNA-binding transcriptional regul Rv1985c Rv3840 (family_assigned) — transcriptional regulator Rv3840

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.