MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv0608 · 41 genes shown · anchor vapC28 · open gene page → · ← back to 1 hop

Evidence: Min score 0
vapB28 (family_assigned) — type II toxin-antitoxin system VapB family antitox vapB28 vapC28 (family_assigned) — type II toxin-antitoxin system VapC family toxin vapC28 Rv0609A (dark) — hypothetical protein Rv0609A Rv0607 (dark) — hypothetical protein Rv0607 Rv0605 (family_assigned) — IS607-like element IS1536 family transposase Rv0605 vapC30 (requalified) — type II toxin-antitoxin system toxin ribonuclease vapC30 vapC42 (family_assigned) — type II toxin-antitoxin system VapC family toxin vapC42 vapC34 (family_assigned) — type II toxin-antitoxin system VapC family toxin vapC34 vapC36 (family_assigned) — type II toxin-antitoxin system VapC family toxin vapC36 vapB30 (requalified) — type II toxin-antitoxin system antitoxin VapB30 vapB30 vapC4 (requalified) — type II toxin-antitoxin system toxin ribonuclease vapC4 vapB34 (family_assigned) — type II toxin-antitoxin system VapB family antitox vapB34 tnpB (family_assigned) — IS607 family element RNA-guided endonuclease TnpB tnpB Rv2885c (requalified) — transposase Rv2885c Rv3827c (requalified) — transposase Rv3827c tnpB (family_assigned) — IS607 family element RNA-guided endonuclease TnpB tnpB Rv2979c (family_assigned) — IS607 family transposase Rv2979c parD1 (family_assigned) — type II toxin-antitoxin system ParD family antitox parD1 Rv1395 (family_assigned) — HTH-type transcriptional regulator Rv1395 ethR (family_assigned) — HTH-type transcriptional regulator EthR ethR sirR (family_assigned) — manganese-binding transcriptional regulator MntR sirR vapB42 (family_assigned) — type II toxin-antitoxin system VapB family antitox vapB42 hsdS (family_assigned) — restriction endonuclease subunit S hsdS Rv2762c (family_assigned) — winged helix-turn-helix domain-containing protein Rv2762c vapC21 (requalified) — type II toxin-antitoxin system toxin ribonuclease vapC21 Rv1742 (family_assigned) — hypothetical protein Rv1742 Rv1739c (family_assigned) — SulP family inorganic anion transporter Rv1739c pknE (requalified) — serine/threonine protein kinase PknE pknE vapB36 (requalified) — antitoxin VapB36 vapB36 PE_PGRS35 (family_assigned) — PE-PGRS family protein PE_PGRS35 PE_PGRS35 vapB11 (requalified) — antitoxin VapB11 vapB11 Rv0919 (family_assigned) — GNAT family N-acetyltransferase Rv0919 Rv0622 (dark) — DUF732 domain-containing protein Rv0622 vapB5 (family_assigned) — type II toxin-antitoxin system Phd/YefM family ant vapB5 vapB4 (requalified) — type II toxin-antitoxin system antitoxin VapB4 vapB4 vapC31 (family_assigned) — type II toxin-antitoxin system VapC family toxin vapC31 Rv0597c (family_assigned) — ATP-binding protein Rv0597c Rv3479 (requalified) — transmembrane protein Rv3479 vapC48 (family_assigned) — type II toxin-antitoxin system VapC family toxin vapC48 lrpA (family_assigned) — transcriptional regulator LrpA lrpA Rv0273c (family_assigned) — TetR/AcrR family transcriptional regulator Rv0273c

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.