MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv0554 · 41 genes shown · anchor menC · open gene page → · ← back to 1 hop

Evidence: Min score 0
bpoC (family_assigned) — alpha/beta hydrolase bpoC menC (requalified) — o-succinylbenzoate synthase menC Rv0552 (requalified) — amidohydrolase Rv0552 menD (requalified) — 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1 menD Rv0556 (family_assigned) — DUF3592 domain-containing protein Rv0556 hpx (requalified) — non-heme haloperoxidase Hpx hpx mgtA (requalified) — GDP-mannose-dependent alpha-mannosyltransferase mgtA fadD8 (requalified) — fatty-acid--CoA ligase FadD8 fadD8 menB (requalified) — 1,4-dihydroxy-2-naphthoyl-CoA synthase menB Rv1930c (requalified) — glutamine amidotransferase Rv1930c ephF (family_assigned) — alpha/beta hydrolase ephF Rv1931c (family_assigned) — transcriptional regulator Rv1931c menH (requalified) — demethylmenaquinone methyltransferase menH menE (requalified) — o-succinylbenzoate--CoA ligase menE entC (requalified) — isochorismate synthase entC Rv2446c (dark) — DUF4233 domain-containing protein Rv2446c Rv3212 (family_assigned) — hypothetical protein Rv3212 Rv1632c (family_assigned) — DUF402 domain-containing protein Rv1632c Rv3177 (family_assigned) — alpha/beta hydrolase Rv3177 Rv2296 (requalified) — haloalkane dehalogenase Rv2296 Rv1833c (requalified) — haloalkane dehalogenase Rv1833c Rv3172c (dark) — hypothetical protein Rv3172c glgB (requalified) — 1%2C4-alpha-glucan branching protein GlgB glgB treZ (requalified) — malto-oligosyltrehalose trehalohydrolase treZ rplF (requalified) — 50S ribosomal protein L6 rplF pks5 (requalified) — sulfolipid-1 biosynthesis phthioceranic/hydroxypht pks5 pks12 (requalified) — type I polyketide synthase pks12 pks2 (requalified) — phthioceranic/hydroxyphthioceranic acid synthase pks2 Rv1847 (family_assigned) — PaaI family thioesterase Rv1847 menA (requalified) — 1%2C4-dihydroxy-2-naphthoate polyprenyltransferase menA Rv0544c (family_assigned) — hypothetical protein Rv0544c Rv1929c (family_assigned) — TIGR03085 family metal-binding protein Rv1929c tpx (requalified) — thiol peroxidase tpx Rv1928c (family_assigned) — SDR family oxidoreductase Rv1928c mas (requalified) — mycocerosate synthase mas ppsC (requalified) — phthiocerol type I polyketide synthase PpsC ppsC Rv1725c (family_assigned) — winged helix-turn-helix transcriptional regulator Rv1725c sigI (requalified) — RNA polymerase sigma factor SigI sigI virS (family_assigned) — AraC family transcriptional regulator virS Rv2488c (family_assigned) — LuxR family transcriptional regulator Rv2488c Rv3736 (family_assigned) — AraC family transcriptional regulator Rv3736

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.