MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv0548c · 46 genes shown · anchor menE · open gene page → · ← back to 1 hop

Evidence: Min score 0
menB (requalified) — 1,4-dihydroxy-2-naphthoyl-CoA synthase menB menE (requalified) — o-succinylbenzoate--CoA ligase menE Rv1847 (family_assigned) — PaaI family thioesterase Rv1847 menD (requalified) — 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1 menD menC (requalified) — o-succinylbenzoate synthase menC menA (requalified) — 1%2C4-dihydroxy-2-naphthoate polyprenyltransferase menA Rv0544c (family_assigned) — hypothetical protein Rv0544c Rv0547c (family_assigned) — SDR family oxidoreductase Rv0547c fadD8 (requalified) — fatty-acid--CoA ligase FadD8 fadD8 bpoC (family_assigned) — alpha/beta hydrolase bpoC Rv0552 (requalified) — amidohydrolase Rv0552 echA17 (requalified) — enoyl-CoA hydratase echA17 echA2 (family_assigned) — crotonase/enoyl-CoA hydratase family protein echA2 Rv0541c (family_assigned) — integral membrane protein Rv0541c Rv0543c (family_assigned) — DUF3349 domain-containing protein Rv0543c pitA (requalified) — anion permease pitA engA (requalified) — ribosome biogenesis GTPase Der engA ureA (family_assigned) — urease subunit gamma ureA ureC (family_assigned) — urease subunit alpha ureC ureF (requalified) — urease accessory protein UreF ureF ureB (family_assigned) — urease subunit beta ureB entC (requalified) — isochorismate synthase entC Rv0556 (family_assigned) — DUF3592 domain-containing protein Rv0556 mgtA (requalified) — GDP-mannose-dependent alpha-mannosyltransferase mgtA menH (requalified) — demethylmenaquinone methyltransferase menH Rv0535 (requalified) — 5'-methylthioadenosine phosphorylase Rv0535 galE3 (requalified) — UDP-glucose 4-epimerase GalE galE3 trpC (requalified) — indole-3-glycerol phosphate synthase TrpC trpC Rv3485c (requalified) — short-chain type dehydrogenase/reductase Rv3485c Rv3740c (family_assigned) — wax ester/triacylglycerol synthase family O-acyltr Rv3740c tgs2 (family_assigned) — wax ester/triacylglycerol synthase family O-acyltr tgs2 rplF (requalified) — 50S ribosomal protein L6 rplF pks5 (requalified) — sulfolipid-1 biosynthesis phthioceranic/hydroxypht pks5 pks12 (requalified) — type I polyketide synthase pks12 pks2 (requalified) — phthioceranic/hydroxyphthioceranic acid synthase pks2 hpx (requalified) — non-heme haloperoxidase Hpx hpx fadB2 (requalified) — 3-hydroxybutyryl-CoA dehydrogenase FadB2 fadB2 fadB3 (requalified) — 3-hydroxybutyryl-CoA dehydrogenase FadB fadB3 Rv3040c (requalified) — NUDIX hydrolase Rv3040c Rv3041c (family_assigned) — ABC transporter ATP-binding protein Rv3041c Rv3038c (family_assigned) — methyltransferase domain-containing protein Rv3038c serB2 (requalified) — phosphoserine phosphatase SerB serB2 fadE4 (family_assigned) — acyl-CoA dehydrogenase family protein fadE4 fadE1 (requalified) — acyl-CoA dehydrogenase FadE1 fadE1 fadE13 (family_assigned) — acyl-CoA dehydrogenase family protein fadE13 fadE23 (family_assigned) — acyl-CoA dehydrogenase family protein fadE23

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.