MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv0004 · 46 genes shown · anchor recF · open gene page → · ← back to 1 hop

Evidence: Min score 0
Rv0004 (requalified) — DNA replication protein DciA Rv0004 recF (requalified) — DNA replication/repair protein RecF recF dnaN (family_assigned) — DNA polymerase III subunit beta dnaN gyrB (family_assigned) — DNA topoisomerase (ATP-hydrolyzing) subunit B gyrB Rv0007 (dark) — DUF3566 domain-containing protein Rv0007 Rv2256c (dark) — hypothetical protein Rv2256c rbpA (family_assigned) — RNA polymerase-binding protein RbpA rbpA Rv2708c (family_assigned) — hypothetical protein Rv2708c Rv2413c (family_assigned) — DNA polymerase III subunit delta Rv2413c Rv1830 (family_assigned) — HTH-type transcriptional regulator Rv1830 Rv0807 (family_assigned) — sterol carrier family protein Rv0807 Rv1002c (requalified) — dolichyl-phosphate-mannose--protein mannosyltransf Rv1002c Rv2146c (family_assigned) — YggT family protein Rv2146c dnaA (requalified) — chromosomal replication initiator protein DnaA dnaA Rv2147c (requalified) — cell division protein SepF Rv2147c polA (requalified) — DNA polymerase I polA dnaE1 (family_assigned) — DNA polymerase III subunit alpha dnaE1 Rv3644c (family_assigned) — DNA polymerase III subunit delta' Rv3644c dnaZX (family_assigned) — DNA polymerase III subunits gamma/tau dnaZX gyrA (family_assigned) — DNA topoisomerase (ATP-hydrolyzing) subunit A gyrA mfpA (requalified) — pentapeptide repeat protein MfpA mfpA Rv0730 (requalified) — GCN5-like N-acetyltransferase Rv0730 Rv1024 (family_assigned) — septum formation initiator family protein Rv1024 Rv3909 (dark) — hypothetical protein Rv3909 Rv2164c (family_assigned) — hypothetical protein Rv2164c ptrp (family_assigned) — hypothetical protein ptrp Rv2257c (family_assigned) — serine hydrolase domain-containing protein Rv2257c Rv2699c (dark) — DUF4193 domain-containing protein Rv2699c Rv2680 (dark) — DUF3000 domain-containing protein Rv2680 Rv2033c (family_assigned) — DUF3097 domain-containing protein Rv2033c rpoA (family_assigned) — DNA-directed RNA polymerase subunit alpha rpoA rpoZ (family_assigned) — DNA-directed RNA polymerase subunit omega rpoZ sigA (requalified) — RNA polymerase sigma factor sigA rpoC (family_assigned) — DNA-directed RNA polymerase subunit beta' rpoC rpoB (family_assigned) — DNA-directed RNA polymerase subunit beta rpoB sigB (family_assigned) — sigma-70 family RNA polymerase sigma factor SigB sigB Rv2709 (dark) — DUF3099 domain-containing protein Rv2709 Rv2219 (family_assigned) — DUF4191 domain-containing protein Rv2219 Rv2731 (family_assigned) — DUF349 domain-containing protein Rv2731 Rv2191 (family_assigned) — hypothetical protein Rv2191 dnaQ (family_assigned) — DEDDh family exonuclease dnaQ secG (family_assigned) — preprotein translocase subunit SecG secG whiB2 (family_assigned) — transcriptional regulator WhiB2 whiB2 whiB1 (family_assigned) — transcriptional regulator WhiB1 whiB1 Rv2206 (family_assigned) — DUF3043 domain-containing protein Rv2206 purF (requalified) — amidophosphoribosyltransferase purF

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.