MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3912 · 46 genes shown · anchor sigM · open gene page → · ← back to 1 hop

Evidence: Min score 0
rsmA (requalified) — anti-sigma-M factor RsmA rsmA sigM (requalified) — ECF RNA polymerase sigma factor SigM sigM Rv3909 (dark) — hypothetical protein Rv3909 murJ (requalified) — murein biosynthesis integral membrane protein MurJ murJ mutT4 (requalified) — NUDIX hydrolase mutT4 trxC (requalified) — thioredoxin trxC trxB2 (requalified) — thioredoxin-disulfide reductase trxB2 Rv3604c (dark) — DUF6779 domain-containing protein Rv3604c Rv1978 (requalified) — class I SAM-dependent methyltransferase Rv1978 Rv0955 (family_assigned) — DUF6350 family protein Rv0955 Rv2687c (family_assigned) — fluoroquinolone transporter permease Rv2687c Rv1733c (family_assigned) — hypothetical protein Rv1733c Rv2181 (requalified) — alpha-(1-2)-phosphatidylinositol mannoside mannosy Rv2181 sigC (requalified) — RNA polymerase sigma factor SigC sigC Rv3906c (requalified) — pullulanase Rv3906c Rv3835 (family_assigned) — septum formation family protein Rv3835 fhaA (requalified) — cell division-associated protein FhaA fhaA pcnA (requalified) — poly(A) polymerase PcnA pcnA Rv3915 (requalified) — peptidoglycan hydrolase Rv3915 dnaJ2 (requalified) — molecular chaperone DnaJ dnaJ2 trxB1 (requalified) — thioredoxin trxB1 csd (requalified) — cysteine desulfurase csd ahpC (requalified) — peroxiredoxin AhpC ahpC Rv1324 (requalified) — co-chaperone YbbN Rv1324 trxA (family_assigned) — thioredoxin family protein trxA Rv3605c (family_assigned) — DUF3180 domain-containing protein Rv3605c pimE (requalified) — mannosyltransferase pimE Rv0804 (family_assigned) — CPBP family intramembrane glutamic endopeptidase Rv0804 PPE2 (family_assigned) — PPE family protein PPE2 PPE2 Rv2686c (family_assigned) — fluoroquinolones efflux ABC transporter permease Rv2686c Rv0210 (family_assigned) — hypothetical protein Rv0210 pks4 (requalified) — polyketide beta-ketoacyl synthase pks4 Rv0954 (requalified) — DUF5336 domain-containing protein Rv0954 mbtG (requalified) — NADPH-dependent L-lysine N(6)-monooxygenase MbtG mbtG purN (requalified) — phosphoribosylglycinamide formyltransferase purN purH (requalified) — bifunctional phosphoribosylaminoimidazolecarboxami purH Rv2688c (family_assigned) — ABC transporter ATP-binding protein Rv2688c Rv3134c (requalified) — universal stress protein Rv3134c acg (family_assigned) — FMN-binding protein Acg acg Rv2627c (family_assigned) — alpha/beta hydrolase Rv2627c hrp1 (requalified) — hypoxic response protein Hrp1 hrp1 Rv2030c (family_assigned) — erythromycin esterase family protein Rv2030c narK2 (requalified) — nitrate transporter NarK narK2 Rv2180c (family_assigned) — integral membrane protein Rv2180c Rv2179c (requalified) — polyadenylate-specific 3'-exoribonuclease AS Rv2179c aroG (requalified) — 3-deoxy-7-phosphoheptulonate synthase class II aroG

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.