MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3911 · 46 genes shown · anchor rsmA · open gene page → · ← back to 1 hop

Evidence: Min score 0
sigM (requalified) — ECF RNA polymerase sigma factor SigM sigM rsmA (requalified) — anti-sigma-M factor RsmA rsmA Rv3909 (dark) — hypothetical protein Rv3909 murJ (requalified) — murein biosynthesis integral membrane protein MurJ murJ mutT4 (requalified) — NUDIX hydrolase mutT4 sigC (requalified) — RNA polymerase sigma factor SigC sigC trxB2 (requalified) — thioredoxin-disulfide reductase trxB2 trxC (requalified) — thioredoxin trxC sigL (family_assigned) — sigma-70 family RNA polymerase sigma factor SigL sigL sigK (family_assigned) — sigma-70 family RNA polymerase sigma factor SigK sigK sigD (requalified) — ECF RNA polymerase sigma factor SigD sigD rslA (requalified) — anti-sigma-L factor RslA rslA sigG (family_assigned) — sigma-70 family RNA polymerase sigma factor SigG sigG Rv3906c (requalified) — pullulanase Rv3906c Rv3835 (family_assigned) — septum formation family protein Rv3835 fhaA (requalified) — cell division-associated protein FhaA fhaA pcnA (requalified) — poly(A) polymerase PcnA pcnA Rv0093c (family_assigned) — membrane protein Rv0093c sigH (family_assigned) — sigma-70 family RNA polymerase sigma factor SigH sigH blaC (requalified) — beta-lactamase blaC Rv2067c (requalified) — class I SAM-dependent methyltransferase Rv2067c trxB1 (requalified) — thioredoxin trxB1 csd (requalified) — cysteine desulfurase csd ahpC (requalified) — peroxiredoxin AhpC ahpC Rv1324 (requalified) — co-chaperone YbbN Rv1324 trxA (family_assigned) — thioredoxin family protein trxA Rv3915 (requalified) — peptidoglycan hydrolase Rv3915 dnaJ2 (requalified) — molecular chaperone DnaJ dnaJ2 rpoB (family_assigned) — DNA-directed RNA polymerase subunit beta rpoB rpoC (family_assigned) — DNA-directed RNA polymerase subunit beta' rpoC rpoA (family_assigned) — DNA-directed RNA polymerase subunit alpha rpoA rpoZ (family_assigned) — DNA-directed RNA polymerase subunit omega rpoZ mapA (requalified) — methionine aminopeptidase mapA rskA (requalified) — anti-sigma-K factor RskA rskA Rv0448c (dark) — hypothetical protein Rv0448c Rv0446c (family_assigned) — DUF1295 domain-containing protein Rv0446c ufaA1 (requalified) — class I SAM-dependent methyltransferase ufaA1 Rv0449c (requalified) — NAD(P)/FAD-dependent oxidoreductase Rv0449c rsdA (requalified) — anti-sigma D factor RsdA rsdA Rv2721c (family_assigned) — LGFP repeat-containing protein Rv2721c Rv3415c (family_assigned) — hypothetical protein Rv3415c ripA (family_assigned) — NlpC/P60 family peptidoglycan endopeptidase RipA ripA pirG (requalified) — exported repetitive protein pirG Rv3717 (family_assigned) — hypothetical protein Rv3717 Rv1145 (requalified) — transmembrane transport protein Rv1145 Rv0737 (family_assigned) — MarR family transcriptional regulator Rv0737

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.