MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3900c · 34 genes shown · open gene page → · ← back to 1 hop

Evidence: Min score 0
Rv3900c (family_assigned) — hypothetical protein Rv3900c Rv3899c (family_assigned) — hypothetical protein Rv3899c Rv3901c (dark) — hypothetical protein Rv3901c Rv3898c (dark) — hypothetical protein Rv3898c Rv3897c (dark) — hypothetical protein Rv3897c pks8 (requalified) — polyketide synthase pks8 Rv0945 (requalified) — oxidoreductase Rv0945 Rv0944 (requalified) — formamidopyrimidine-DNA glycosylase Rv0944 Rv0943c (dark) — hypothetical protein Rv0943c eccD2 (family_assigned) — type VII secretion system ESX-2 subunit EccD2 eccD2 eccB2 (family_assigned) — type VII secretion system ESX-2 subunit EccB2 eccB2 eccC2 (family_assigned) — type VII secretion system ESX-2 FtsK/SpoIIIE famil eccC2 Rv2423 (requalified) — class I SAM-dependent methyltransferase Rv2423 PE_PGRS16 (family_assigned) — PE-PGRS family protein PE_PGRS16 PE_PGRS16 pykA (requalified) — pyruvate kinase pykA Rv3896c (requalified) — transglycosylase Rv3896c pks17 (requalified) — polyketide synthase pks17 pks7 (requalified) — type I polyketide synthase pks7 pks9 (requalified) — type I polyketide synthase pks9 mbtB (requalified) — phenyloxazoline synthase MbtB mbtB pks5 (requalified) — sulfolipid-1 biosynthesis phthioceranic/hydroxypht pks5 pks2 (requalified) — phthioceranic/hydroxyphthioceranic acid synthase pks2 Rv3485c (requalified) — short-chain type dehydrogenase/reductase Rv3485c Rv3530c (family_assigned) — SDR family oxidoreductase Rv3530c Rv0769 (family_assigned) — SDR family oxidoreductase Rv0769 Rv1714 (family_assigned) — SDR family oxidoreductase Rv1714 fpg (requalified) — DNA-formamidopyrimidine glycosylase fpg polA (requalified) — DNA polymerase I polA nei (requalified) — endonuclease VIII Nei2 nei Rv1903 (family_assigned) — phage holin family protein Rv1903 Rv3083 (requalified) — NAD(P)/FAD-dependent oxidoreductase Rv3083 Rv0565c (requalified) — NAD(P)/FAD-dependent oxidoreductase Rv0565c Rv1868 (family_assigned) — NAD(P)H-binding protein Rv1868 ethA (requalified) — FAD-containing monooxygenase EthA ethA

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.