MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3888c · 32 genes shown · anchor eccD2 · open gene page → · ← back to 1 hop

Evidence: Min score 0
Rv3888c (family_assigned) — MinD/ParA family protein Rv3888c eccD2 (family_assigned) — type VII secretion system ESX-2 subunit EccD2 eccD2 mycP2 (requalified) — type VII secretion system ESX-2 serine protease my mycP2 eccE2 (family_assigned) — type VII secretion system ESX-2 subunit EccE2 eccE2 eccA2 (family_assigned) — type VII secretion system ESX-2 AAA family ATPase eccA2 mycP5 (requalified) — type VII secretion system ESX-5 serine protease my mycP5 eccC2 (family_assigned) — type VII secretion system ESX-2 FtsK/SpoIIIE famil eccC2 espG2 (requalified) — type VII secretion system ESX-2 associated protein espG2 eccB2 (family_assigned) — type VII secretion system ESX-2 subunit EccB2 eccB2 eccD5 (family_assigned) — type VII secretion system ESX-5 subunit EccD5 eccD5 eccB5 (family_assigned) — type VII secretion system ESX-5 subunit EccB5 eccB5 eccC5 (requalified) — ESX-5 type VII secretion system protein EccC5 eccC5 sigF (requalified) — RNA polymerase sigma factor SigF sigF Rv3899c (family_assigned) — hypothetical protein Rv3899c eccB4 (family_assigned) — type VII secretion system ESX-4 subunit EccB4 eccB4 eccE1 (family_assigned) — type VII secretion system ESX-1 subunit EccE1 eccE1 glpK (requalified) — glycerol kinase GlpK glpK mycP1 (requalified) — type VII secretion system ESX-1 serine protease my mycP1 eccE5 (family_assigned) — type VII secretion system ESX-5 subunit EccE5 eccE5 eccA5 (family_assigned) — type VII secretion system ESX-5 AAA family ATPase eccA5 eccB3 (family_assigned) — type VII secretion system ESX-3 subunit EccB3 eccB3 eccD3 (family_assigned) — type VII secretion system ESX-3 subunit EccD3 eccD3 esxC (family_assigned) — WXG100 family type VII secretion target esxC esxD (family_assigned) — WXG100 family type VII secretion target esxD Rv3896c (requalified) — transglycosylase Rv3896c eccD4 (family_assigned) — type VII secretion system ESX-4 subunit EccD4 eccD4 rsbW (requalified) — anti-sigma B factor RsbW rsbW Rv1364c (family_assigned) — sigma factor regulatory protein Rv1364c rpoB (family_assigned) — DNA-directed RNA polymerase subunit beta rpoB rpoC (family_assigned) — DNA-directed RNA polymerase subunit beta' rpoC usfY (family_assigned) — hypothetical protein usfY rpoA (family_assigned) — DNA-directed RNA polymerase subunit alpha rpoA

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.