MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3854c · 46 genes shown · anchor ethR · open gene page → · ← back to 1 hop

Evidence: Min score 0
ethA (requalified) — FAD-containing monooxygenase EthA ethA Rv3083 (requalified) — NAD(P)/FAD-dependent oxidoreductase Rv3083 ethR (family_assigned) — HTH-type transcriptional regulator EthR ethR Rv0943c (dark) — hypothetical protein Rv0943c atpA (family_assigned) — F0F1 ATP synthase subunit alpha atpA Rv1507c (family_assigned) — WbqC family protein Rv1507c atpG (family_assigned) — F0F1 ATP synthase subunit gamma atpG rplQ (requalified) — 50S ribosomal protein L17 rplQ atpD (family_assigned) — F0F1 ATP synthase subunit beta atpD rpmJ (requalified) — 50S ribosomal protein L36 rpmJ sodA (requalified) — superoxide dismutase sodA fba (requalified) — class II fructose-bisphosphate aldolase fba dnaJ2 (requalified) — molecular chaperone DnaJ dnaJ2 Rv3085 (family_assigned) — SDR family NAD(P)-dependent oxidoreductase Rv3085 lipR (family_assigned) — alpha/beta hydrolase lipR adhD (requalified) — NDMA-dependent alcohol dehydrogenase adhD tgs4 (family_assigned) — wax ester/triacylglycerol synthase family O-acyltr tgs4 fadD13 (requalified) — long-chain-fatty-acid--CoA ligase FadD13 fadD13 Rv3087 (family_assigned) — wax ester/triacylglycerol synthase family O-acyltr Rv3087 Rv0158 (family_assigned) — TetR/AcrR family transcriptional regulator Rv0158 Rv3060c (family_assigned) — FCD domain-containing protein Rv3060c Rv1985c (family_assigned) — ArgP/LysG family DNA-binding transcriptional regul Rv1985c vapC30 (requalified) — type II toxin-antitoxin system toxin ribonuclease vapC30 Rv1019 (family_assigned) — TetR/AcrR family transcriptional regulator Rv1019 Rv3183 (family_assigned) — XRE family transcriptional regulator Rv3183 Rv0945 (requalified) — oxidoreductase Rv0945 Rv0944 (requalified) — formamidopyrimidine-DNA glycosylase Rv0944 Rv0565c (requalified) — NAD(P)/FAD-dependent oxidoreductase Rv0565c Rv1868 (family_assigned) — NAD(P)H-binding protein Rv1868 atpH (family_assigned) — F0F1 ATP synthase subunit B/delta atpH atpB (family_assigned) — F0F1 ATP synthase subunit A atpB atpE (family_assigned) — F0F1 ATP synthase subunit C atpE atpC (family_assigned) — F0F1 ATP synthase subunit epsilon atpC atpF (family_assigned) — F0F1 ATP synthase subunit B atpF rplO (requalified) — 50S ribosomal protein L15 rplO rplV (requalified) — 50S ribosomal protein L22 rplV rpsK (requalified) — 30S ribosomal protein S11 rpsK rpsJ (requalified) — 30S ribosomal protein S10 rpsJ rpmF (requalified) — 50S ribosomal protein L32 rpmF rpsI (requalified) — 30S ribosomal protein S9 rpsI rplU (requalified) — 50S ribosomal protein L21 rplU rpsC (requalified) — 30S ribosomal protein S3 rpsC rpmD (requalified) — 50S ribosomal protein L30 rpmD rplI (requalified) — 50S ribosomal protein L9 rplI rplF (requalified) — 50S ribosomal protein L6 rplF rplM (requalified) — 50S ribosomal protein L13 rplM

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.