MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3853 · 46 genes shown · anchor hns · open gene page → · ← back to 1 hop

Evidence: Min score 0
rraA (requalified) — ribonuclease E activity regulator RraA rraA hns (family_assigned) — histone-like protein Hns hns Rv3850 (family_assigned) — DUF6474 family protein Rv3850 Rv3851 (dark) — hypothetical protein Rv3851 icl1 (requalified) — isocitrate lyase icl1 espR (family_assigned) — type VII secretion system ESX-1 transcriptional re espR sodA (requalified) — superoxide dismutase sodA rhlE (requalified) — DEAD/DEAH box helicase rhlE deaD (requalified) — DEAD/DEAH box helicase deaD Rv1869c (requalified) — FAD-dependent oxidoreductase Rv1869c Rv0688 (requalified) — FAD/NAD(P)-binding oxidoreductase Rv0688 nirB (family_assigned) — nitrite reductase large subunit NirB nirB mscL (requalified) — large-conductance mechanosensitive channel protein mscL lsr2 (requalified) — histone-like nucleoid-structuring protein Lsr2 lsr2 hupB (family_assigned) — DNA-binding protein HupB hupB Rv3438 (family_assigned) — alpha/beta hydrolase Rv3438 Rv1109c (requalified) — lipid droplet-associated protein Rv1109c Rv2732c (family_assigned) — hypothetical protein Rv2732c Rv0556 (family_assigned) — DUF3592 domain-containing protein Rv0556 glcB (requalified) — malate synthase G glcB fadB2 (requalified) — 3-hydroxybutyryl-CoA dehydrogenase FadB2 fadB2 aceAb (requalified) — isocitrate lyase AceAb aceAb aceAa (requalified) — isocitrate lyase AceAa aceAa acn (requalified) — iron-regulated aconitate hydratase Acn acn ackA (requalified) — acetate kinase ackA Rv0882 (dark) — DUF2537 domain-containing protein Rv0882 Rv3647c (family_assigned) — hypothetical protein Rv3647c Rv2091c (family_assigned) — DUF4333 domain-containing protein Rv2091c rseA (requalified) — anti-sigma E factor RseA rseA rplQ (requalified) — 50S ribosomal protein L17 rplQ rplO (requalified) — 50S ribosomal protein L15 rplO rpsQ (requalified) — 30S ribosomal protein S17 rpsQ rplM (requalified) — 50S ribosomal protein L13 rplM rplC (requalified) — 50S ribosomal protein L3 rplC Rv2367c (requalified) — endoribonuclease Rv2367c gpsI (requalified) — polyribonucleotide nucleotidyltransferase gpsI Rv3433c (requalified) — NAD(P)H-hydrate dehydratase Rv3433c rplD (requalified) — 50S ribosomal protein L4 rplD Rv3212 (family_assigned) — hypothetical protein Rv3212 Rv1254 (requalified) — acyltransferase Rv1254 fusA2 (family_assigned) — elongation factor G-like protein EF-G2 fusA2 nirD (family_assigned) — nitrite reductase small subunit NirD nirD Rv1870c (family_assigned) — hypothetical protein Rv1870c rubA (requalified) — rubredoxin rubA rubB (requalified) — rubredoxin RubB rubB Rv1871c (family_assigned) — nitroreductase family deazaflavin-dependent oxidor Rv1871c

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.