MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3852 · 29 genes shown · anchor rraA · open gene page → · ← back to 1 hop

Evidence: Min score 0
hns (family_assigned) — histone-like protein Hns hns rraA (requalified) — ribonuclease E activity regulator RraA rraA Rv3850 (family_assigned) — DUF6474 family protein Rv3850 Rv3851 (dark) — hypothetical protein Rv3851 espR (family_assigned) — type VII secretion system ESX-1 transcriptional re espR lsr2 (requalified) — histone-like nucleoid-structuring protein Lsr2 lsr2 hupB (family_assigned) — DNA-binding protein HupB hupB icl1 (requalified) — isocitrate lyase icl1 sodA (requalified) — superoxide dismutase sodA Rv3438 (family_assigned) — alpha/beta hydrolase Rv3438 Rv1109c (requalified) — lipid droplet-associated protein Rv1109c Rv2732c (family_assigned) — hypothetical protein Rv2732c Rv0556 (family_assigned) — DUF3592 domain-containing protein Rv0556 Rv0882 (dark) — DUF2537 domain-containing protein Rv0882 Rv3647c (family_assigned) — hypothetical protein Rv3647c Rv2091c (family_assigned) — DUF4333 domain-containing protein Rv2091c rseA (requalified) — anti-sigma E factor RseA rseA clpC1 (family_assigned) — ATP-dependent protease ATP-binding subunit ClpC clpC1 panD (requalified) — aspartate 1-decarboxylase panD panC (requalified) — pantoate--beta-alanine ligase panC Rv3600c (requalified) — type III pantothenate kinase Rv3600c Rv3603c (family_assigned) — Rossmann-like and DUF2520 domain-containing protei Rv3603c Rv3604c (dark) — DUF6779 domain-containing protein Rv3604c rpsO (requalified) — 30S ribosomal protein S15 rpsO rpsT (requalified) — 30S ribosomal protein S20 rpsT pheT (family_assigned) — phenylalanine--tRNA ligase subunit beta pheT rplS (requalified) — 50S ribosomal protein L19 rplS tuf (requalified) — elongation factor Tu tuf leuD (family_assigned) — 3-isopropylmalate dehydratase small subunit leuD

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.