MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3649 · 46 genes shown · anchor cspA · open gene page → · ← back to 1 hop

Evidence: Min score 0
Rv3649 (requalified) — DEAD/DEAH box helicase Rv3649 cspA (requalified) — cold shock protein CspA cspA PE33 (family_assigned) — PE family protein PE33 PE33 Rv2908c (family_assigned) — RNA-binding protein Rv2908c Rv3920c (family_assigned) — R3H domain-containing nucleic acid-binding protein Rv3920c cspB (requalified) — cold-shock protein cspB deaD (requalified) — DEAD/DEAH box helicase deaD rphA (requalified) — ribonuclease PH rphA rnj (requalified) — ribonuclease J rnj rpsL (requalified) — 30S ribosomal protein S12 rpsL rplO (requalified) — 50S ribosomal protein L15 rplO tuf (requalified) — elongation factor Tu tuf rpmJ (requalified) — 50S ribosomal protein L36 rpmJ esxJ (requalified) — type VII secretion system ESX-5 protein EsxJ esxJ rpmE (requalified) — 50S ribosomal protein L31 rpmE Rv3651 (family_assigned) — DUF5628 domain-containing protein Rv3651 rpsP (requalified) — 30S ribosomal protein S16 rpsP rimM (requalified) — ribosome maturation factor RimM rimM rpsI (requalified) — 30S ribosomal protein S9 rpsI trmD (requalified) — tRNA (guanosine(37)-N1)-methyltransferase TrmD trmD rplS (requalified) — 50S ribosomal protein L19 rplS yidC (requalified) — membrane protein insertase YidC yidC rnpA (requalified) — ribonuclease P protein component rnpA yidD (requalified) — membrane protein insertion efficiency factor YidD yidD gid (requalified) — 16S rRNA (guanine(527)-N(7))-methyltransferase Rsm gid parB (family_assigned) — ParB/RepB/Spo0J family partition protein parB moaA2 (requalified) — GTP 3'%2C8-cyclase MoaA moaA2 Rv0870c (family_assigned) — YccF domain-containing protein Rv0870c moaD2 (family_assigned) — molybdopterin synthase subunit MoaD2 moaD2 rpoZ (family_assigned) — DNA-directed RNA polymerase subunit omega rpoZ tyrA (requalified) — prephenate dehydrogenase TyrA tyrA rpoA (family_assigned) — DNA-directed RNA polymerase subunit alpha rpoA Rv3433c (requalified) — NAD(P)H-hydrate dehydratase Rv3433c rplD (requalified) — 50S ribosomal protein L4 rplD rplM (requalified) — 50S ribosomal protein L13 rplM Rv1254 (requalified) — acyltransferase Rv1254 rplC (requalified) — 50S ribosomal protein L3 rplC fusA2 (family_assigned) — elongation factor G-like protein EF-G2 fusA2 rdgB (family_assigned) — RdgB/HAM1 family non-canonical purine NTP pyrophos rdgB Rv2681 (requalified) — ribonuclease D Rv2681 rpsA (requalified) — 30S ribosomal protein S1 rpsA Rv1339 (family_assigned) — hypothetical protein Rv1339 rpsD (requalified) — 30S ribosomal protein S4 rpsD rpsK (requalified) — 30S ribosomal protein S11 rpsK dapA (requalified) — 4-hydroxy-tetrahydrodipicolinate synthase dapA thyX (requalified) — FAD-dependent thymidylate synthase thyX

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.