MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3586 · 45 genes shown · anchor radA · open gene page → · ← back to 1 hop

Evidence: Min score 0
disA (requalified) — DNA integrity scanning diadenylate cyclase DisA disA radA (requalified) — DNA repair protein RadA radA lpqE (family_assigned) — hypothetical protein lpqE adnA (requalified) — ATP-dependent DNA helicase AdnA adnA Rv3714c (family_assigned) — hypothetical protein Rv3714c Rv2375 (family_assigned) — type II toxin-antitoxin system VapB family antitox Rv2375 ispD (requalified) — 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans ispD carD (requalified) — RNA polymerase-binding transcription factor CarD carD ispF (requalified) — 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate syn ispF Rv3555c (family_assigned) — DUF559 domain-containing protein Rv3555c Rv2191 (family_assigned) — hypothetical protein Rv2191 lhr (requalified) — ATP-dependent helicase lhr recX (requalified) — recombination regulator RecX recX thiL (requalified) — thiamine-phosphate kinase thiL recA (requalified) — intein-containing recombinase RecA recA Rv2876 (requalified) — transmembrane protein Rv2876 ctaD (family_assigned) — cytochrome c oxidase subunit I ctaD qcrA (requalified) — hypothetical protein qcrA ctaC (family_assigned) — cytochrome c oxidase subunit II ctaC qcrC (requalified) — cytochrome c qcrC qcrB (family_assigned) — cytochrome bc complex cytochrome b subunit qcrB adnB (requalified) — ATP-dependent DNA helicase AdnB adnB uvrD2 (requalified) — ATP-dependent DNA helicase UvrD2 uvrD2 nudC (requalified) — NAD(+) diphosphatase nudC Rv3200c (family_assigned) — potassium channel family protein Rv3200c recR (requalified) — recombination mediator RecR recR Rv3716c (family_assigned) — YbaB/EbfC family nucleoid-associated protein Rv3716c gltB (family_assigned) — glutamate synthase large subunit gltB Rv3776 (family_assigned) — hypothetical protein Rv3776 hrcA (requalified) — heat-inducible transcriptional repressor HrcA hrcA dnaJ2 (requalified) — molecular chaperone DnaJ dnaJ2 Rv2372c (requalified) — 16S rRNA (uracil(1498)-N(3))-methyltransferase Rv2372c Rv1929c (family_assigned) — TIGR03085 family metal-binding protein Rv1929c Rv2466c (family_assigned) — Rv2466c family mycothiol-dependent reductase Rv2466c dxr (requalified) — 1-deoxy-D-xylulose-5-phosphate reductoisomerase dxr ispE (requalified) — 4-diphosphocytidyl-2C-methyl-D-erythritol kinase ispE rlmB (requalified) — 23S rRNA (guanosine(2251)-2'-O)-methyltransferase rlmB cysS1 (requalified) — cysteine--tRNA ligase cysS1 rpoB (family_assigned) — DNA-directed RNA polymerase subunit beta rpoB rpoA (family_assigned) — DNA-directed RNA polymerase subunit alpha rpoA rpoC (family_assigned) — DNA-directed RNA polymerase subunit beta' rpoC rpoZ (family_assigned) — DNA-directed RNA polymerase subunit omega rpoZ sigA (requalified) — RNA polymerase sigma factor sigA whiB7 (family_assigned) — transcriptional regulator WhiB7 whiB7 gcpE (requalified) — flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-e gcpE

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.