MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3583c · 34 genes shown · anchor ispD · open gene page → · ← back to 1 hop

Evidence: Min score 0
carD (requalified) — RNA polymerase-binding transcription factor CarD carD rpoB (family_assigned) — DNA-directed RNA polymerase subunit beta rpoB rpoA (family_assigned) — DNA-directed RNA polymerase subunit alpha rpoA rpoC (family_assigned) — DNA-directed RNA polymerase subunit beta' rpoC rpoZ (family_assigned) — DNA-directed RNA polymerase subunit omega rpoZ sigA (requalified) — RNA polymerase sigma factor sigA whiB7 (family_assigned) — transcriptional regulator WhiB7 whiB7 rbpA (family_assigned) — RNA polymerase-binding protein RbpA rbpA ispD (requalified) — 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans ispD ispF (requalified) — 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate syn ispF lldD2 (requalified) — quinone-dependent L-lactate dehydrogenase lldD2 Rv1871c (family_assigned) — nitroreductase family deazaflavin-dependent oxidor Rv1871c rlmB (requalified) — 23S rRNA (guanosine(2251)-2'-O)-methyltransferase rlmB sigB (family_assigned) — sigma-70 family RNA polymerase sigma factor SigB sigB sigL (family_assigned) — sigma-70 family RNA polymerase sigma factor SigL sigL rpsM (requalified) — 30S ribosomal protein S13 rpsM rpsH (requalified) — 30S ribosomal protein S8 rpsH helZ (requalified) — DEAD/DEAH box helicase helZ whiB1 (family_assigned) — transcriptional regulator WhiB1 whiB1 dxr (requalified) — 1-deoxy-D-xylulose-5-phosphate reductoisomerase dxr ispE (requalified) — 4-diphosphocytidyl-2C-methyl-D-erythritol kinase ispE cysS1 (requalified) — cysteine--tRNA ligase cysS1 gcpE (requalified) — flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-e gcpE pykA (requalified) — pyruvate kinase pykA mftD (requalified) — pre-mycofactocin synthase MftD mftD pca (requalified) — pyruvate carboxylase pca Rv2455c (family_assigned) — 2-oxoacid:acceptor oxidoreductase subunit alpha Rv2455c mez (requalified) — NAD-dependent malic enzyme mez fbpA (requalified) — diacylglycerol acyltransferase/mycolyltransferase fbpA Rv1870c (family_assigned) — hypothetical protein Rv1870c tuf (requalified) — elongation factor Tu tuf cspA (requalified) — cold shock protein CspA cspA rplK (requalified) — 50S ribosomal protein L11 rplK pheT (family_assigned) — phenylalanine--tRNA ligase subunit beta pheT

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.