MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3580c · 46 genes shown · anchor rlmB · open gene page → · ← back to 1 hop

Evidence: Min score 0
cysS1 (requalified) — cysteine--tRNA ligase cysS1 rlmB (requalified) — 23S rRNA (guanosine(2251)-2'-O)-methyltransferase rlmB cysE (requalified) — serine O-acetyltransferase cysE ispF (requalified) — 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate syn ispF ispD (requalified) — 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans ispD serS (requalified) — serine--tRNA ligase serS carD (requalified) — RNA polymerase-binding transcription factor CarD carD thrS (requalified) — threonine--tRNA ligase thrS Rv1976c (family_assigned) — NYN domain-containing protein Rv1976c cysK1 (requalified) — O-acetylserine sulfhydrylase cysK1 Rv0073 (family_assigned) — ATP-binding cassette domain-containing protein Rv0073 glnQ (family_assigned) — ATP-binding cassette domain-containing protein glnQ cbs (requalified) — cystathionine beta-synthase cbs rplK (requalified) — 50S ribosomal protein L11 rplK pheT (family_assigned) — phenylalanine--tRNA ligase subunit beta pheT Rv3684 (requalified) — lyase Rv3684 sdaA (requalified) — L-serine ammonia-lyase sdaA serB2 (requalified) — phosphoserine phosphatase SerB serB2 gcpE (requalified) — flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-e gcpE ispE (requalified) — 4-diphosphocytidyl-2C-methyl-D-erythritol kinase ispE dxr (requalified) — 1-deoxy-D-xylulose-5-phosphate reductoisomerase dxr Rv3835 (family_assigned) — septum formation family protein Rv3835 Rv2133c (family_assigned) — SCO1664 family protein Rv2133c Rv3836 (family_assigned) — metallopeptidase family protein Rv3836 valS (requalified) — valine--tRNA ligase valS yidD (requalified) — membrane protein insertion efficiency factor YidD yidD rpoB (family_assigned) — DNA-directed RNA polymerase subunit beta rpoB rpoA (family_assigned) — DNA-directed RNA polymerase subunit alpha rpoA rpoC (family_assigned) — DNA-directed RNA polymerase subunit beta' rpoC rpoZ (family_assigned) — DNA-directed RNA polymerase subunit omega rpoZ sigA (requalified) — RNA polymerase sigma factor sigA whiB7 (family_assigned) — transcriptional regulator WhiB7 whiB7 infB (requalified) — translation initiation factor IF-2 infB rplO (requalified) — 50S ribosomal protein L15 rplO rpsO (requalified) — 30S ribosomal protein S15 rpsO Rv2613c (requalified) — ATP adenylyltransferase Rv2613c rpmF (requalified) — 50S ribosomal protein L32 rpmF rplC (requalified) — 50S ribosomal protein L3 rplC mshC (requalified) — cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D mshC Rv0881 (requalified) — RNA methyltransferase Rv0881 tsnR (requalified) — RNA methyltransferase tsnR Rv0380c (requalified) — RNA methyltransferase Rv0380c metB (requalified) — cystathionine gamma-synthase metB metZ (requalified) — O-succinylhomoserine sulfhydrylase metZ sirA (requalified) — sulfite reductase sirA cysK2 (requalified) — cysteine synthase CysK cysK2

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.