MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3579c · 46 genes shown · anchor cysS1 · open gene page → · ← back to 1 hop

Evidence: Min score 0
rlmB (requalified) — 23S rRNA (guanosine(2251)-2'-O)-methyltransferase rlmB cysS1 (requalified) — cysteine--tRNA ligase cysS1 rplK (requalified) — 50S ribosomal protein L11 rplK ispF (requalified) — 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate syn ispF ispD (requalified) — 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans ispD pheT (family_assigned) — phenylalanine--tRNA ligase subunit beta pheT carD (requalified) — RNA polymerase-binding transcription factor CarD carD rsfS (requalified) — ribosome silencing factor rsfS rplQ (requalified) — 50S ribosomal protein L17 rplQ rplU (requalified) — 50S ribosomal protein L21 rplU rplO (requalified) — 50S ribosomal protein L15 rplO rplC (requalified) — 50S ribosomal protein L3 rplC rplM (requalified) — 50S ribosomal protein L13 rplM cysE (requalified) — serine O-acetyltransferase cysE serS (requalified) — serine--tRNA ligase serS rplR (requalified) — 50S ribosomal protein L18 rplR rplJ (requalified) — 50S ribosomal protein L10 rplJ rplY (requalified) — 50S ribosomal protein L25/general stress protein C rplY rpsF (requalified) — 30S ribosomal protein S6 rpsF Rv0500B (family_assigned) — Conserved hypothetical protein Rv0500B rplA (requalified) — 50S ribosomal protein L1 rplA gcpE (requalified) — flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-e gcpE ispE (requalified) — 4-diphosphocytidyl-2C-methyl-D-erythritol kinase ispE dxr (requalified) — 1-deoxy-D-xylulose-5-phosphate reductoisomerase dxr pheS (family_assigned) — phenylalanine--tRNA ligase subunit alpha pheS leuS (requalified) — leucine--tRNA ligase leuS ileS (requalified) — isoleucine--tRNA ligase ileS rpsB (requalified) — 30S ribosomal protein S2 rpsB rpoB (family_assigned) — DNA-directed RNA polymerase subunit beta rpoB rpoA (family_assigned) — DNA-directed RNA polymerase subunit alpha rpoA rpoC (family_assigned) — DNA-directed RNA polymerase subunit beta' rpoC rpoZ (family_assigned) — DNA-directed RNA polymerase subunit omega rpoZ sigA (requalified) — RNA polymerase sigma factor sigA whiB7 (family_assigned) — transcriptional regulator WhiB7 whiB7 rplN (requalified) — 50S ribosomal protein L14 rplN nadD (requalified) — nicotinate-nucleotide adenylyltransferase nadD rplS (requalified) — 50S ribosomal protein L19 rplS rpmA (requalified) — 50S ribosomal protein L27 rpmA rplV (requalified) — 50S ribosomal protein L22 rplV rpsK (requalified) — 30S ribosomal protein S11 rpsK rpsJ (requalified) — 30S ribosomal protein S10 rpsJ rpmF (requalified) — 50S ribosomal protein L32 rpmF rpsI (requalified) — 30S ribosomal protein S9 rpsI rpmG2 (requalified) — 50S ribosomal protein L33 rpmG2 rpmE (requalified) — 50S ribosomal protein L31 rpmE rpsM (requalified) — 30S ribosomal protein S13 rpsM

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.