MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3479 · 46 genes shown · anchor vapB5 · open gene page → · ← back to 1 hop

Evidence: Min score 0
Rv3479 (requalified) — transmembrane protein Rv3479 Rv1947 (family_assigned) — hypothetical protein Rv1947 vapB5 (family_assigned) — type II toxin-antitoxin system Phd/YefM family ant vapB5 Rv0470A (family_assigned) — hypothetical protein Rv0470A Rv1639c (family_assigned) — alpha/beta hydrolase family protein Rv1639c vapC4 (requalified) — type II toxin-antitoxin system toxin ribonuclease vapC4 vapC8 (family_assigned) — PIN domain-containing protein vapC8 PPE60 (family_assigned) — PE family protein PPE60 PPE60 Rv1995 (family_assigned) — hemerythrin domain-containing protein Rv1995 Rv1775 (family_assigned) — hypothetical protein Rv1775 PE_PGRS43 (family_assigned) — PE-PGRS family protein PE_PGRS43 PE_PGRS43 PPE8 (family_assigned) — PPE family protein PPE8 PPE8 iniB (requalified) — isoniazid-induced protein IniB iniB dinG (requalified) — ATP-dependent helicase DinG dinG rpoA (family_assigned) — DNA-directed RNA polymerase subunit alpha rpoA rpoB (family_assigned) — DNA-directed RNA polymerase subunit beta rpoB rpoZ (family_assigned) — DNA-directed RNA polymerase subunit omega rpoZ Rv2529 (family_assigned) — hypothetical protein Rv2529 polA (requalified) — DNA polymerase I polA vapC5 (family_assigned) — type II toxin-antitoxin system VapC family toxin vapC5 vapC47 (family_assigned) — type II toxin-antitoxin system VapC family toxin vapC47 vapC46 (family_assigned) — type II toxin-antitoxin system VapC family toxin vapC46 Rv0471c (requalified) — 1%2C4-dihydroxy-2-naphthoate prenyltransferase Rv0471c Rv0472c (family_assigned) — TetR/AcrR family transcriptional regulator Rv0472c PE_PGRS28 (family_assigned) — PE-PGRS family protein PE_PGRS28 PE_PGRS28 PPE55 (family_assigned) — PPE family protein PPE55 PPE55 PPE56 (family_assigned) — PPE family protein PPE56 PPE56 Rv1638A (family_assigned) — hypothetical protein Rv1638A mftF (requalified) — mycofactocin biosynthesis glycosyltransferase MftF mftF Rv2160A (family_assigned) — Conserved hypothetical protein Rv2160A mftE (requalified) — mycofactocin biosynthesis peptidyl-dipeptidase Mft mftE lysX (requalified) — bifunctional lysine--tRNA ligase/phosphatidylglyce lysX vapB4 (requalified) — type II toxin-antitoxin system antitoxin VapB4 vapB4 vapC31 (family_assigned) — type II toxin-antitoxin system VapC family toxin vapC31 Rv0597c (family_assigned) — ATP-binding protein Rv0597c vapC48 (family_assigned) — type II toxin-antitoxin system VapC family toxin vapC48 vapB8 (requalified) — antitoxin VapB8 vapB8 Rv0666 (dark) — hypothetical protein Rv0666 atsD (requalified) — arylsulfatase AtsD atsD vapB47 (requalified) — antitoxin VapB47 vapB47 PE31 (family_assigned) — PE family protein PE31 PE31 Rv0178 (requalified) — Mce associated membrane protein Rv0178 PE8 (family_assigned) — PE family protein PE8 PE8 esxA (requalified) — ESAT-6 protein EsxA esxA Rv1996 (requalified) — universal stress protein Rv1996 cmtR (family_assigned) — Cd(II)/Pb(II)-sensing metalloregulatory transcript cmtR

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.