MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3439c · 46 genes shown · anchor mrsA · open gene page → · ← back to 1 hop

Evidence: Min score 0
Rv3439c (family_assigned) — hypothetical protein Rv3439c Rv3440c (family_assigned) — hypothetical protein Rv3440c mrsA (requalified) — phosphoglucosamine mutase mrsA cpnT (requalified) — outer membrane channel protein/necrotizing toxin g cpnT vapC42 (family_assigned) — type II toxin-antitoxin system VapC family toxin vapC42 vapB42 (family_assigned) — type II toxin-antitoxin system VapB family antitox vapB42 rpsI (requalified) — 30S ribosomal protein S9 rpsI esxT (family_assigned) — WXG100 family type VII secretion target esxT rplM (requalified) — 50S ribosomal protein L13 rplM sigM (requalified) — ECF RNA polymerase sigma factor SigM sigM Rv3657c (family_assigned) — membrane protein Rv3657c glmU (requalified) — bifunctional UDP-N-acetylglucosamine diphosphoryla glmU glmS (requalified) — glutamine--fructose-6-phosphate transaminase (isom glmS nagA (requalified) — N-acetylglucosamine-6-phosphate deacetylase nagA ift (requalified) — necrotizing toxin immunity factor IFT ift esxE (requalified) — ESAT-6 like protein EsxE esxE eccD4 (family_assigned) — type VII secretion system ESX-4 subunit EccD4 eccD4 esxF (requalified) — pore-forming CpnT exporter EsxF esxF Rv3446c (family_assigned) — type VII secretion-associated protein Rv3446c Rv2488c (family_assigned) — LuxR family transcriptional regulator Rv2488c vapB30 (requalified) — type II toxin-antitoxin system antitoxin VapB30 vapB30 hsdS (family_assigned) — restriction endonuclease subunit S hsdS Rv2762c (family_assigned) — winged helix-turn-helix domain-containing protein Rv2762c vapB34 (family_assigned) — type II toxin-antitoxin system VapB family antitox vapB34 vapC21 (requalified) — type II toxin-antitoxin system toxin ribonuclease vapC21 Rv0273c (family_assigned) — TetR/AcrR family transcriptional regulator Rv0273c sigJ (family_assigned) — sigma-70 family RNA polymerase sigma factor SigJ sigJ Rv3488 (family_assigned) — PadR family transcriptional regulator Rv3488 rpsC (requalified) — 30S ribosomal protein S3 rpsC rplU (requalified) — 50S ribosomal protein L21 rplU rplI (requalified) — 50S ribosomal protein L9 rplI rpmD (requalified) — 50S ribosomal protein L30 rpmD rplD (requalified) — 50S ribosomal protein L4 rplD esxU (requalified) — type VII secretion system ESX-4 protein EsxU esxU eccC4 (family_assigned) — type VII secretion system ESX-4 FtsK/SpoIIIE famil eccC4 mycP4 (requalified) — type VII secretion system ESX-4 serine protease my mycP4 rplY (requalified) — 50S ribosomal protein L25/general stress protein C rplY rpmG2 (requalified) — 50S ribosomal protein L33 rpmG2 rpmE (requalified) — 50S ribosomal protein L31 rpmE rplR (requalified) — 50S ribosomal protein L18 rplR rpmA (requalified) — 50S ribosomal protein L27 rpmA rplQ (requalified) — 50S ribosomal protein L17 rplQ rsmA (requalified) — anti-sigma-M factor RsmA rsmA Rv3909 (dark) — hypothetical protein Rv3909 murJ (requalified) — murein biosynthesis integral membrane protein MurJ murJ mutT4 (requalified) — NUDIX hydrolase mutT4

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.