MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3424c · 46 genes shown · anchor PPE57 · open gene page → · ← back to 1 hop

Evidence: Min score 0
Rv3424c (dark) — hypothetical protein Rv3424c PPE57 (family_assigned) — PPE family protein PPE57 PPE57 rimI (requalified) — ribosomal protein S18-alanine N-acetyltransferase rimI alr (requalified) — alanine racemase alr tsaE (family_assigned) — tRNA (adenosine(37)-N6)-threonylcarbamoyltransfera tsaE gcp (family_assigned) — tRNA (adenosine(37)-N6)-threonylcarbamoyltransfera gcp tsaB (family_assigned) — tRNA (adenosine(37)-N6)-threonylcarbamoyltransfera tsaB Rv1501 (family_assigned) — phytanoyl-CoA dioxygenase family protein Rv1501 mmpL9 (requalified) — RND transporter MmpL9 mmpL9 Rv1507c (family_assigned) — WbqC family protein Rv1507c mmpS4 (requalified) — siderophore RND transporter accessory protein MmpS mmpS4 radA (requalified) — DNA repair protein RadA radA PE_PGRS19 (family_assigned) — PE-PGRS family protein PE_PGRS19 PE_PGRS19 PPE58 (family_assigned) — PPE family protein PPE58 PPE58 esxB (family_assigned) — type VII secretion system ESX-1 WXG100 family targ esxB esxA (requalified) — ESAT-6 protein EsxA esxA PPE39 (family_assigned) — PPE family protein PPE39 PPE39 Rv1255c (family_assigned) — helix-turn-helix domain-containing protein Rv1255c gadB (requalified) — glutamate decarboxylase gadB groES (requalified) — chaperonin GroES groES ddlA (requalified) — D-alanine--D-alanine ligase DdlA ddlA ald (requalified) — alanine dehydrogenase ald murF (requalified) — UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanin murF Rv3433c (requalified) — NAD(P)H-hydrate dehydratase Rv3433c pheS (family_assigned) — phenylalanine--tRNA ligase subunit alpha pheS birA (requalified) — biotin--[acetyl-CoA-carboxylase] ligase birA Rv1500 (family_assigned) — glycosyltransferase family 2 protein Rv1500 Rv1502 (family_assigned) — hypothetical protein Rv1502 Rv1499 (requalified) — glycosyltransferase (part1) Rv1499 Rv1867 (requalified) — acetyl-CoA acetyltransferase Rv1867 Rv3351c (family_assigned) — hypothetical protein Rv3351c dprE1 (requalified) — decaprenylphospho-beta-D-ribofuranose 2-dehydrogen dprE1 Rv1598c (family_assigned) — nitroreductase family deazaflavin-dependent oxidor Rv1598c Rv1303 (family_assigned) — ATP synthase subunit I Rv1303 eccD3 (family_assigned) — type VII secretion system ESX-3 subunit EccD3 eccD3 lppX (requalified) — LppX_LprAFG lipoprotein lppX Rv0128 (family_assigned) — YoaK family protein Rv0128 eccB3 (family_assigned) — type VII secretion system ESX-3 subunit EccB3 eccB3 atpH (family_assigned) — F0F1 ATP synthase subunit B/delta atpH atpD (family_assigned) — F0F1 ATP synthase subunit beta atpD atpA (family_assigned) — F0F1 ATP synthase subunit alpha atpA atpC (family_assigned) — F0F1 ATP synthase subunit epsilon atpC atpE (family_assigned) — F0F1 ATP synthase subunit C atpE atpB (family_assigned) — F0F1 ATP synthase subunit A atpB mmpL4 (requalified) — transmembrane transport protein MmpL4 mmpL4 Rv0449c (requalified) — NAD(P)/FAD-dependent oxidoreductase Rv0449c

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.