MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3416 · 46 genes shown · open gene page → · ← back to 1 hop

Evidence: Min score 0
whiB3 (family_assigned) — redox-responsive transcriptional regulator WhiB3 whiB3 Rv2901c (dark) — DUF2469 domain-containing protein Rv2901c sigA (requalified) — RNA polymerase sigma factor sigA Rv1830 (family_assigned) — HTH-type transcriptional regulator Rv1830 Rv2119 (family_assigned) — RecB family exonuclease Rv2119 Rv3415c (family_assigned) — hypothetical protein Rv3415c Rv3220c (family_assigned) — histidine kinase N-terminal domain-containing prot Rv3220c secG (family_assigned) — preprotein translocase subunit SecG secG rpoZ (family_assigned) — DNA-directed RNA polymerase subunit omega rpoZ Rv0807 (family_assigned) — sterol carrier family protein Rv0807 Rv2738c (family_assigned) — DUF3046 domain-containing protein Rv2738c sigD (requalified) — ECF RNA polymerase sigma factor SigD sigD rsdA (requalified) — anti-sigma D factor RsdA rsdA rnhB (requalified) — ribonuclease HII rnhB lepB (requalified) — signal peptidase I lepB whiB1 (family_assigned) — transcriptional regulator WhiB1 whiB1 whiB2 (family_assigned) — transcriptional regulator WhiB2 whiB2 rplS (requalified) — 50S ribosomal protein L19 rplS rpoB (family_assigned) — DNA-directed RNA polymerase subunit beta rpoB rpoA (family_assigned) — DNA-directed RNA polymerase subunit alpha rpoA whiB7 (family_assigned) — transcriptional regulator WhiB7 whiB7 rpoC (family_assigned) — DNA-directed RNA polymerase subunit beta' rpoC rbpA (family_assigned) — RNA polymerase-binding protein RbpA rbpA Rv2699c (dark) — DUF4193 domain-containing protein Rv2699c trmI (requalified) — tRNA (adenine(58)-N(1))-methyltransferase TrmI trmI adnA (requalified) — ATP-dependent DNA helicase AdnA adnA Rv3259 (family_assigned) — metallopeptidase family protein Rv3259 uvrD1 (requalified) — ATP-dependent DNA helicase UvrD uvrD1 Rv3662c (requalified) — oxidoreductase Rv3662c Rv2695 (requalified) — alpha/beta fold hydrolase Rv2695 octT (requalified) — diglucosylglycerate octanoyltransferase octT Rv2186c (requalified) — polyketide cyclase / dehydrase and lipid transport Rv2186c ttfA (requalified) — trehalose monomycolate transport factor TtfA ttfA TB7.3 (requalified) — biotin/lipoyl-binding carrier protein TB7.3 Rv1626 (family_assigned) — ANTAR domain-containing response regulator Rv1626 Rv0513 (family_assigned) — DUF3093 domain-containing protein Rv0513 sigH (family_assigned) — sigma-70 family RNA polymerase sigma factor SigH sigH secE1 (requalified) — preprotein translocase SecE secE1 secY (family_assigned) — preprotein translocase subunit SecY secY yidC (requalified) — membrane protein insertase YidC yidC secA1 (family_assigned) — protein translocase subunit SecA secA1 secA2 (requalified) — accessory Sec system translocase SecA2 secA2 ftsY (requalified) — signal recognition particle-docking protein FtsY ftsY helZ (requalified) — DEAD/DEAH box helicase helZ Rv2413c (family_assigned) — DNA polymerase III subunit delta Rv2413c Rv2708c (family_assigned) — hypothetical protein Rv2708c

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.