MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3414c · 46 genes shown · anchor rsdA · open gene page → · ← back to 1 hop

Evidence: Min score 0
sigD (requalified) — ECF RNA polymerase sigma factor SigD sigD rsdA (requalified) — anti-sigma D factor RsdA rsdA Rv2721c (family_assigned) — LGFP repeat-containing protein Rv2721c Rv3415c (family_assigned) — hypothetical protein Rv3415c ripA (family_assigned) — NlpC/P60 family peptidoglycan endopeptidase RipA ripA pirG (requalified) — exported repetitive protein pirG Rv3717 (family_assigned) — hypothetical protein Rv3717 Rv0063 (requalified) — FAD-binding oxidoreductase Rv0063 lprO (family_assigned) — phosphodiester glycosidase family protein lprO Rv0312 (family_assigned) — Hsp70 family protein Rv0312 Rv1987 (family_assigned) — cellulose-binding protein Rv1987 wag31 (requalified) — cell wall synthesis protein Wag31 wag31 rshA (requalified) — anti-sigma factor RshA rshA Rv0210 (family_assigned) — hypothetical protein Rv0210 Rv0556 (family_assigned) — DUF3592 domain-containing protein Rv0556 Rv2360c (family_assigned) — hypothetical protein Rv2360c Rv0996 (family_assigned) — hypothetical protein Rv0996 mtc28 (family_assigned) — LpqN/LpqT family lipoprotein mtc28 Rv1157c (dark) — hypothetical protein Rv1157c ripB (family_assigned) — NlpC/P60 family peptidoglycan endopeptidase RipB ripB Rv2695 (requalified) — alpha/beta fold hydrolase Rv2695 octT (requalified) — diglucosylglycerate octanoyltransferase octT Rv2186c (requalified) — polyketide cyclase / dehydrase and lipid transport Rv2186c ttfA (requalified) — trehalose monomycolate transport factor TtfA ttfA ripD (family_assigned) — NlpC/P60 family peptidoglycan-binding protein RipD ripD ftsW (family_assigned) — putative lipid II flippase FtsW ftsW fbpC (requalified) — diacylglycerol acyltransferase/mycolyltransferase fbpC Rv1158c (dark) — hypothetical protein Rv1158c Rv3915 (requalified) — peptidoglycan hydrolase Rv3915 Rv3209 (family_assigned) — MmpS family transport accessory protein Rv3209 Rv3096 (requalified) — 1%2C4-beta-xylanase Rv3096 Rv3716c (family_assigned) — YbaB/EbfC family nucleoid-associated protein Rv3716c recR (requalified) — recombination mediator RecR recR xerC (requalified) — tyrosine recombinase XerC xerC hsr1 (requalified) — hypothetical protein hsr1 Rv0180c (family_assigned) — YhgE/Pip domain-containing protein Rv0180c Rv0181c (family_assigned) — pirin family protein Rv0181c htpG (requalified) — molecular chaperone HtpG htpG grpE (requalified) — nucleotide exchange factor GrpE grpE dnaJ1 (requalified) — chaperone protein DnaJ dnaJ1 dnaJ2 (requalified) — molecular chaperone DnaJ dnaJ2 Rv0315 (requalified) — family 16 glycosylhydrolase Rv0315 Rv0518 (family_assigned) — SGNH/GDSL hydrolase family protein Rv0518 Rv1836c (family_assigned) — substrate-binding domain-containing protein Rv1836c eccD3 (family_assigned) — type VII secretion system ESX-3 subunit EccD3 eccD3 Rv2144c (dark) — hypothetical protein Rv2144c

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.