MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3406 · 46 genes shown · open gene page → · ← back to 1 hop

Evidence: Min score 0
Rv3406 (requalified) — alpha-ketoglutarate-dependent sulfate ester dioxyg Rv3406 Rv3405c (family_assigned) — helix-turn-helix domain-containing protein Rv3405c vapC47 (family_assigned) — type II toxin-antitoxin system VapC family toxin vapC47 vapB47 (requalified) — antitoxin VapB47 vapB47 Rv0147 (requalified) — aldehyde dehydrogenase Rv0147 Rv0458 (family_assigned) — aldehyde dehydrogenase family protein Rv0458 aldC (requalified) — aldehyde dehydrogenase AldC aldC aldA (requalified) — aldehyde dehydrogenase aldA rocA (requalified) — L-glutamate gamma-semialdehyde dehydrogenase rocA pcd (requalified) — piperideine-6-carboxylic acid dehydrogenase pcd Rv0223c (requalified) — aldehyde dehydrogenase Rv0223c mmsA (requalified) — CoA-acylating methylmalonate-semialdehyde dehydrog mmsA gabD1 (requalified) — succinate-semialdehyde dehydrogenase gabD1 cobB (requalified) — NAD-dependent protein deacylase cobB Rv3183 (family_assigned) — XRE family transcriptional regulator Rv3183 Rv2282c (family_assigned) — LysR family transcriptional regulator Rv2282c Rv3066 (family_assigned) — TetR/AcrR family transcriptional regulator Rv3066 Rv3840 (family_assigned) — transcriptional regulator Rv3840 vapB46 (requalified) — antitoxin VapB46 vapB46 vapB5 (family_assigned) — type II toxin-antitoxin system Phd/YefM family ant vapB5 vapC8 (family_assigned) — PIN domain-containing protein vapC8 vapC5 (family_assigned) — type II toxin-antitoxin system VapC family toxin vapC5 vapC35 (family_assigned) — type II toxin-antitoxin system VapC family toxin vapC35 vapC46 (family_assigned) — type II toxin-antitoxin system VapC family toxin vapC46 vapC1 (requalified) — type II toxin-antitoxin system ribonuclease VapC1 vapC1 acs (requalified) — acetate--CoA ligase acs gabT (requalified) — 4-aminobutyrate--2-oxoglutarate transaminase gabT fadB (requalified) — fatty oxidation protein FadB fadB ackA (requalified) — acetate kinase ackA adhB (requalified) — alcohol dehydrogenase B adhB Rv0459 (family_assigned) — DUF779 domain-containing protein Rv0459 adhE1 (family_assigned) — zinc-type alcohol dehydrogenase subunit E adhE1 adh (requalified) — zinc-binding dehydrogenase adh Rv2857c (requalified) — 3-oxoacyl-ACP reductase Rv2857c glnA4 (family_assigned) — glutamine synthetase family protein glnA4 Rv2859c (requalified) — gamma-glutamyl-gamma-aminobutyrate hydrolase Rv2859c Rv1188 (requalified) — proline dehydrogenase Rv1188 Rv1691 (family_assigned) — hypothetical protein Rv1691 Rv2267c (requalified) — sulfotransferase Rv2267c Rv0765c (family_assigned) — SDR family oxidoreductase Rv0765c Rv0770 (requalified) — NAD(P)-dependent oxidoreductase Rv0770 cyp123 (requalified) — cytochrome P450 cyp123 cyp51 (requalified) — lanosterol 14-alpha demethylase cyp51 rocD1 (family_assigned) — Probable ornithine aminotransferase (N-terminus pa rocD1 gltB (family_assigned) — glutamate synthase large subunit gltB gadB (requalified) — glutamate decarboxylase gadB

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.