MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3404c · 46 genes shown · open gene page → · ← back to 1 hop

Evidence: Min score 0
Rv3404c (requalified) — dTDP-4-amino-4%2C6-dideoxyglucose formyltransferas Rv3404c fmu (requalified) — 16S rRNA m5C967 methyltransferase fmu Rv3403c (family_assigned) — FAD/NAD(P)-binding protein Rv3403c pstP (requalified) — phosphoserine/threonine phosphatase PstP pstP nusB (requalified) — transcription antitermination factor NusB nusB Rv3402c (family_assigned) — DegT/DnrJ/EryC1/StrS family aminotransferase Rv3402c priA (family_assigned) — primosomal protein N' priA Rv3405c (family_assigned) — helix-turn-helix domain-containing protein Rv3405c gatC (family_assigned) — Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subun gatC def (requalified) — peptide deformylase def folD (requalified) — bifunctional methylenetetrahydrofolate dehydrogena folD iscS (family_assigned) — cysteine desulfurase family protein iscS aftD (family_assigned) — DUF3367 domain-containing protein aftD fmt (requalified) — methionyl-tRNA formyltransferase fmt rplJ (requalified) — 50S ribosomal protein L10 rplJ rpsJ (requalified) — 30S ribosomal protein S10 rpsJ ligA (requalified) — NAD-dependent DNA ligase LigA ligA PPE55 (family_assigned) — PPE family protein PPE55 PPE55 Rv2209 (requalified) — MFS transporter Rv2209 PPE56 (family_assigned) — PPE family protein PPE56 PPE56 PPE8 (family_assigned) — PPE family protein PPE8 PPE8 PPE5 (family_assigned) — PPE family protein PPE5 PPE5 pknB (family_assigned) — Stk1 family PASTA domain-containing Ser/Thr kinase pknB pknA (requalified) — serine/threonine protein kinase PknA pknA rodA (requalified) — cell shape-determining peptidoglycan glycosyltrans rodA pbpA (requalified) — D%2CD-transpeptidase PbpA pbpA pknD (requalified) — serine/threonine protein kinase PknD pknD Rv2532c (requalified) — antitermination protein NusB Rv2532c efp (requalified) — elongation factor P efp pepQ (family_assigned) — Xaa-Pro peptidase family protein pepQ nusA (requalified) — transcription termination factor NusA nusA rpoZ (family_assigned) — DNA-directed RNA polymerase subunit omega rpoZ mbtI (requalified) — salicylate synthase mbtI mbtB (requalified) — phenyloxazoline synthase MbtB mbtB mbtK (requalified) — lysine N-acyltransferase MbtK mbtK irtB (family_assigned) — iron ABC transporter ATP-binding protein/permease irtB irtA (family_assigned) — iron ABC transporter ATP-binding protein/permease irtA mbtJ (requalified) — acetyl hydrolase mbtJ ssb (family_assigned) — single-stranded DNA-binding protein ssb Rv1401 (family_assigned) — membrane protein Rv1401 Rv2478c (family_assigned) — hypothetical protein Rv2478c dfp (requalified) — bifunctional phosphopantothenoylcysteine decarboxy dfp Rv0051 (family_assigned) — glycosyltransferase family 87 protein Rv0051 cobB (requalified) — NAD-dependent protein deacylase cobB Rv3406 (requalified) — alpha-ketoglutarate-dependent sulfate ester dioxyg Rv3406 Rv3183 (family_assigned) — XRE family transcriptional regulator Rv3183

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.