MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3398c · 30 genes shown · anchor phyA · open gene page → · ← back to 1 hop

Evidence: Min score 0
idsA1 (requalified) — multifunctional dimethylallyltransferase/geranyltr idsA1 phyA (requalified) — presqualene diphosphate synthase HpnD phyA Rv1086 (family_assigned) — undecaprenyl diphosphate synthase family protein Rv1086 grcC2 (requalified) — polyprenyl-diphosphate synthase GrcC grcC2 grcC1 (requalified) — polyprenyl-diphosphate synthase GrcC grcC1 idsA2 (requalified) — bifunctional (2E%2C6E)-farnesyl/geranyl diphosphat idsA2 idsB (family_assigned) — polyprenyl synthetase family protein idsB idi (requalified) — isopentenyl-diphosphate Delta-isomerase idi Rv3382c (requalified) — 4-hydroxy-3-methylbut-2-enyl diphosphate reductase Rv3382c lytB2 (requalified) — 4-hydroxy-3-methylbut-2-enyl diphosphate reductase lytB2 Rv3399 (requalified) — S-adenosylmethionine-dependent methyltransferase Rv3399 guaA (requalified) — glutamine-hydrolyzing GMP synthase guaA Rv2361c (requalified) — decaprenyl diphosphate synthase Rv2361c menJ (requalified) — menaquinone reductase menJ gcpE (requalified) — flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-e gcpE rpsA (requalified) — 30S ribosomal protein S1 rpsA Rv3400 (family_assigned) — beta-phosphoglucomutase family hydrolase Rv3400 Rv3401 (family_assigned) — glycoside hydrolase family 65 protein Rv3401 Rv0401 (dark) — DUF3054 domain-containing protein Rv0401 guaB2 (requalified) — IMP dehydrogenase guaB2 guaB1 (family_assigned) — GuaB1 family IMP dehydrogenase-related protein guaB1 guaB3 (family_assigned) — GuaB3 family IMP dehydrogenase-related protein guaB3 apt (requalified) — adenine phosphoribosyltransferase apt argS (requalified) — arginine--tRNA ligase argS rplK (requalified) — 50S ribosomal protein L11 rplK Rv2360c (family_assigned) — hypothetical protein Rv2360c recO (requalified) — DNA repair protein RecO recO amiA2 (requalified) — amidase amiA2 dxr (requalified) — 1-deoxy-D-xylulose-5-phosphate reductoisomerase dxr cdsA (requalified) — phosphatidate cytidylyltransferase cdsA

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.