MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3397c · 46 genes shown · anchor idsA1 · open gene page → · ← back to 1 hop

Evidence: Min score 0
phyA (requalified) — presqualene diphosphate synthase HpnD phyA idsA1 (requalified) — multifunctional dimethylallyltransferase/geranyltr idsA1 idsA2 (requalified) — bifunctional (2E%2C6E)-farnesyl/geranyl diphosphat idsA2 Rv3399 (requalified) — S-adenosylmethionine-dependent methyltransferase Rv3399 grcC1 (requalified) — polyprenyl-diphosphate synthase GrcC grcC1 grcC2 (requalified) — polyprenyl-diphosphate synthase GrcC grcC2 idsB (family_assigned) — polyprenyl synthetase family protein idsB nuoH (family_assigned) — NADH-quinone oxidoreductase subunit NuoH nuoH erg3 (requalified) — membrane-bound C-5 sterol desaturase erg3 guaA (requalified) — glutamine-hydrolyzing GMP synthase guaA dinF (family_assigned) — MATE family efflux transporter dinF gap (requalified) — type I glyceraldehyde-3-phosphate dehydrogenase gap nuoC (family_assigned) — NADH-quinone oxidoreductase subunit C nuoC Rv1086 (family_assigned) — undecaprenyl diphosphate synthase family protein Rv1086 idi (requalified) — isopentenyl-diphosphate Delta-isomerase idi Rv3400 (family_assigned) — beta-phosphoglucomutase family hydrolase Rv3400 Rv3401 (family_assigned) — glycoside hydrolase family 65 protein Rv3401 Rv0401 (dark) — DUF3054 domain-containing protein Rv0401 menJ (requalified) — menaquinone reductase menJ Rv3382c (requalified) — 4-hydroxy-3-methylbut-2-enyl diphosphate reductase Rv3382c nuoF (family_assigned) — NADH-quinone oxidoreductase subunit NuoF nuoF nuoD (family_assigned) — NADH dehydrogenase (quinone) subunit D nuoD nuoA (family_assigned) — NADH-quinone oxidoreductase subunit A nuoA nuoL (family_assigned) — NADH-quinone oxidoreductase subunit L nuoL nuoM (family_assigned) — NADH-quinone oxidoreductase subunit M nuoM nuoE (family_assigned) — NADH-quinone oxidoreductase subunit NuoE nuoE Rv3377c (requalified) — type B diterpene cyclase Rv3377c Rv1815 (family_assigned) — hypothetical protein Rv1815 Rv1364c (family_assigned) — sigma factor regulatory protein Rv1364c Rv1354c (requalified) — bifunctional diguanylate cyclase/phosphodiesterase Rv1354c Rv1937 (requalified) — FAD-binding oxidoreductase Rv1937 guaB2 (requalified) — IMP dehydrogenase guaB2 guaB1 (family_assigned) — GuaB1 family IMP dehydrogenase-related protein guaB1 guaB3 (family_assigned) — GuaB3 family IMP dehydrogenase-related protein guaB3 apt (requalified) — adenine phosphoribosyltransferase apt argS (requalified) — arginine--tRNA ligase argS rplK (requalified) — 50S ribosomal protein L11 rplK infB (requalified) — translation initiation factor IF-2 infB rbfA (requalified) — 30S ribosome-binding factor RbfA rbfA nrnA (requalified) — bifunctional oligoribonuclease/PAP phosphatase Nrn nrnA Rv2840c (family_assigned) — hypothetical protein Rv2840c ugpA (family_assigned) — sugar ABC transporter permease ugpA pgk (requalified) — phosphoglycerate kinase pgk tpi (requalified) — triose-phosphate isomerase tpi fba (requalified) — class II fructose-bisphosphate aldolase fba eno (requalified) — phosphopyruvate hydratase eno

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.