MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3383c · 26 genes shown · anchor lytB1 · open gene page → · ← back to 1 hop

Evidence: Min score 0
idsB (family_assigned) — polyprenyl synthetase family protein idsB Rv3382c (requalified) — 4-hydroxy-3-methylbut-2-enyl diphosphate reductase Rv3382c Rv1086 (family_assigned) — undecaprenyl diphosphate synthase family protein Rv1086 grcC2 (requalified) — polyprenyl-diphosphate synthase GrcC grcC2 grcC1 (requalified) — polyprenyl-diphosphate synthase GrcC grcC1 idsA2 (requalified) — bifunctional (2E%2C6E)-farnesyl/geranyl diphosphat idsA2 idsA1 (requalified) — multifunctional dimethylallyltransferase/geranyltr idsA1 idi (requalified) — isopentenyl-diphosphate Delta-isomerase idi lytB2 (requalified) — 4-hydroxy-3-methylbut-2-enyl diphosphate reductase lytB2 phyA (requalified) — presqualene diphosphate synthase HpnD phyA Rv2361c (requalified) — decaprenyl diphosphate synthase Rv2361c Rv3377c (requalified) — type B diterpene cyclase Rv3377c gcpE (requalified) — flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-e gcpE rpsA (requalified) — 30S ribosomal protein S1 rpsA menJ (requalified) — menaquinone reductase menJ Rv3399 (requalified) — S-adenosylmethionine-dependent methyltransferase Rv3399 Rv2360c (family_assigned) — hypothetical protein Rv2360c recO (requalified) — DNA repair protein RecO recO amiA2 (requalified) — amidase amiA2 dxr (requalified) — 1-deoxy-D-xylulose-5-phosphate reductoisomerase dxr cdsA (requalified) — phosphatidate cytidylyltransferase cdsA Rv3378c (requalified) — diterpene synthase Rv3378c erg3 (requalified) — membrane-bound C-5 sterol desaturase erg3 dxs2 (requalified) — 1-deoxy-D-xylulose-5-phosphate synthase dxs2 Rv2293c (family_assigned) — hypothetical protein Rv2293c Rv1004c (family_assigned) — hypothetical protein Rv1004c

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.