MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3349c · 45 genes shown · open gene page → · ← back to 1 hop

Evidence: Min score 0
Rv3349c (requalified) — transposase Rv3349c Rv1978 (requalified) — class I SAM-dependent methyltransferase Rv1978 Rv2086 (family_assigned) — hypothetical protein Rv2086 Rv3786c (family_assigned) — peptidoglycan DD-metalloendopeptidase family prote Rv3786c hsr1 (requalified) — hypothetical protein hsr1 Rv2311 (family_assigned) — hypothetical protein Rv2311 Rv2812 (family_assigned) — helix-turn-helix domain-containing protein Rv2812 Rv2082 (dark) — DUF5631 domain-containing protein Rv2082 Rv3899c (family_assigned) — hypothetical protein Rv3899c Rv3896c (requalified) — transglycosylase Rv3896c rsmA (requalified) — anti-sigma-M factor RsmA rsmA Rv0837c (family_assigned) — type IV toxin-antitoxin system AbiEi family antito Rv0837c Rv2687c (family_assigned) — fluoroquinolone transporter permease Rv2687c Rv2686c (family_assigned) — fluoroquinolones efflux ABC transporter permease Rv2686c Rv0210 (family_assigned) — hypothetical protein Rv0210 pks4 (requalified) — polyketide beta-ketoacyl synthase pks4 Rv3604c (dark) — DUF6779 domain-containing protein Rv3604c Rv2085 (family_assigned) — hypothetical protein Rv2085 Rv2087 (family_assigned) — Conserved hypothetical protein Rv2087 eccD4 (family_assigned) — type VII secretion system ESX-4 subunit EccD4 eccD4 PPE56 (family_assigned) — PPE family protein PPE56 PPE56 Rv3787c (requalified) — class I SAM-dependent methyltransferase Rv3787c Rv1005c (requalified) — para-aminobenzoate synthase component I Rv1005c trpE (requalified) — anthranilate synthase component I trpE mbtI (requalified) — salicylate synthase mbtI Rv1006 (family_assigned) — hypothetical protein Rv1006 Rv1868 (family_assigned) — NAD(P)H-binding protein Rv1868 xerC (requalified) — tyrosine recombinase XerC xerC recC (family_assigned) — exodeoxyribonuclease V subunit gamma recC truB (requalified) — tRNA pseudouridine(55) synthase TruB truB Rv2312 (dark) — hypothetical protein Rv2312 Rv2529 (family_assigned) — hypothetical protein Rv2529 recB (family_assigned) — exodeoxyribonuclease V subunit beta recB dinG (requalified) — ATP-dependent helicase DinG dinG Rv2813 (family_assigned) — ExeA family protein Rv2813 Rv2811 (family_assigned) — hypothetical protein Rv2811 PE_PGRS16 (family_assigned) — PE-PGRS family protein PE_PGRS16 PE_PGRS16 Rv2083 (dark) — hypothetical protein Rv2083 Rv2305 (family_assigned) — hypothetical protein Rv2305 Rv2084 (dark) — hypothetical protein Rv2084 eccD2 (family_assigned) — type VII secretion system ESX-2 subunit EccD2 eccD2 eccB2 (family_assigned) — type VII secretion system ESX-2 subunit EccB2 eccB2 eccC2 (family_assigned) — type VII secretion system ESX-2 FtsK/SpoIIIE famil eccC2 Rv3900c (family_assigned) — hypothetical protein Rv3900c Rv2423 (requalified) — class I SAM-dependent methyltransferase Rv2423

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.