MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3336c · 46 genes shown · anchor yhjD · open gene page → · ← back to 1 hop

Evidence: Min score 0
trpS (requalified) — tryptophan--tRNA ligase trpS yhjD (requalified) — inner membrane protein YhjD yhjD pmmB (requalified) — phospho-sugar mutase pmmB Rv3338 (family_assigned) — Conserved hypothetical protein Rv3338 Rv3337 (family_assigned) — Conserved hypothetical protein Rv3337 pheT (family_assigned) — phenylalanine--tRNA ligase subunit beta pheT serS (requalified) — serine--tRNA ligase serS glyS (requalified) — glycine--tRNA ligase glyS proV (family_assigned) — glycine betaine/L-proline ABC transporter ATP-bind proV valS (requalified) — valine--tRNA ligase valS pepQ (family_assigned) — Xaa-Pro peptidase family protein pepQ leuS (requalified) — leucine--tRNA ligase leuS pepE (family_assigned) — Xaa-Pro peptidase family protein pepE Rv3013 (family_assigned) — amino acid-binding protein Rv3013 Rv3753c (family_assigned) — hypothetical protein Rv3753c Rv2446c (dark) — DUF4233 domain-containing protein Rv2446c deoD (requalified) — purine-nucleoside phosphorylase deoD manB (requalified) — D-alpha-D-mannose-1-phosphate guanylyltransferase manB manA (requalified) — mannose-6-phosphate isomerase%2C class I manA pmmA (requalified) — phosphomannomutase/phosphoglucomutase pmmA amiA1 (requalified) — N-acyl-L-amino acid amidohydrolase AmiA amiA1 amiB1 (requalified) — amidase AmiB amiB1 Rv0885 (requalified) — diiron oxygenase Rv0885 rsdA (requalified) — anti-sigma D factor RsdA rsdA Rv0210 (family_assigned) — hypothetical protein Rv0210 fprB (requalified) — FAD-dependent oxidoreductase fprB pks12 (requalified) — type I polyketide synthase pks12 ppsC (requalified) — phthiocerol type I polyketide synthase PpsC ppsC pks5 (requalified) — sulfolipid-1 biosynthesis phthioceranic/hydroxypht pks5 pheS (family_assigned) — phenylalanine--tRNA ligase subunit alpha pheS ileS (requalified) — isoleucine--tRNA ligase ileS rpsB (requalified) — 30S ribosomal protein S2 rpsB rpoB (family_assigned) — DNA-directed RNA polymerase subunit beta rpoB rplO (requalified) — 50S ribosomal protein L15 rplO cysS1 (requalified) — cysteine--tRNA ligase cysS1 Rv3835 (family_assigned) — septum formation family protein Rv3835 Rv2133c (family_assigned) — SCO1664 family protein Rv2133c Rv3836 (family_assigned) — metallopeptidase family protein Rv3836 yidD (requalified) — membrane protein insertion efficiency factor YidD yidD htpG (requalified) — molecular chaperone HtpG htpG ppa (requalified) — inorganic diphosphatase ppa Rv1515c (family_assigned) — methyltransferase domain-containing protein Rv1515c zur (requalified) — zinc uptake transcriptional repressor Zur zur proZ (family_assigned) — glycine betaine/carnitine/choline/L-proline ABC tr proZ proW (family_assigned) — glycine betaine/carnitine/choline/L-proline ABC tr proW proX (family_assigned) — glycine betaine/carnitine/choline/L-proline ABC tr proX

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.