MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3063 · 46 genes shown · anchor ligB · open gene page → · ← back to 1 hop

Evidence: Min score 0
cstA (family_assigned) — carbon starvation CstA family protein cstA ligB (requalified) — ATP-dependent DNA ligase ligB acs (requalified) — acetate--CoA ligase acs dctA (family_assigned) — cation:dicarboxylase symporter family transporter dctA Rv1188 (requalified) — proline dehydrogenase Rv1188 fadE22 (requalified) — acyl-CoA dehydrogenase fadE22 Rv1249c (family_assigned) — hypothetical protein Rv1249c Rv0887c (family_assigned) — VOC family protein Rv0887c pcd (requalified) — piperideine-6-carboxylic acid dehydrogenase pcd ackA (requalified) — acetate kinase ackA Rv0223c (requalified) — aldehyde dehydrogenase Rv0223c aldC (requalified) — aldehyde dehydrogenase AldC aldC aldA (requalified) — aldehyde dehydrogenase aldA ligA (requalified) — NAD-dependent DNA ligase LigA ligA lppK (family_assigned) — hypothetical protein lppK dnaN (family_assigned) — DNA polymerase III subunit beta dnaN polA (requalified) — DNA polymerase I polA Rv2090 (requalified) — 5'-3' exonuclease Rv2090 gltA2 (requalified) — citrate synthase gltA2 prpC (requalified) — 2-methylcitrate synthase prpC citA (requalified) — citrate synthase 2 citA glcB (requalified) — malate synthase G glcB Rv0147 (requalified) — aldehyde dehydrogenase Rv0147 sdhD (family_assigned) — succinate dehydrogenase hydrophobic membrane ancho sdhD metH (requalified) — methionine synthase metH Rv1488 (family_assigned) — SPFH domain-containing protein Rv1488 Rv3090 (family_assigned) — SPFH domain-containing protein Rv3090 Rv1770 (family_assigned) — hypothetical protein Rv1770 rocA (requalified) — L-glutamate gamma-semialdehyde dehydrogenase rocA proC (requalified) — pyrroline-5-carboxylate reductase proC pip (family_assigned) — proline-specific peptidase family protein pip Rv1186c (family_assigned) — PucR family transcriptional regulator Rv1186c fadB (requalified) — fatty oxidation protein FadB fadB Rv3060c (family_assigned) — FCD domain-containing protein Rv3060c fixA (family_assigned) — electron transfer flavoprotein subunit beta/FixA f fixA chsH1 (family_assigned) — 3-oxo-23%2C24-bisnorchol-4%2C17(20)-dien-22-oyl-Co chsH1 fixB (family_assigned) — electron transfer flavoprotein subunit alpha/FixB fixB Rv0264c (family_assigned) — allophanate hydrolase subunit 1 Rv0264c Rv1248c (family_assigned) — multifunctional oxoglutarate decarboxylase/oxoglut Rv1248c Rv0263c (family_assigned) — 5-oxoprolinase/urea amidolyase family protein Rv0263c Rv1245c (family_assigned) — SDR family NAD(P)-dependent oxidoreductase Rv1245c Rv1171 (family_assigned) — hypothetical protein Rv1171 Rv1931c (family_assigned) — transcriptional regulator Rv1931c Rv1190 (requalified) — alpha/beta fold hydrolase Rv1190 Rv1725c (family_assigned) — winged helix-turn-helix transcriptional regulator Rv1725c sigI (requalified) — RNA polymerase sigma factor SigI sigI

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.