MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3062 · 46 genes shown · anchor fadE22 · open gene page → · ← back to 1 hop

Evidence: Min score 0
ligB (requalified) — ATP-dependent DNA ligase ligB ligA (requalified) — NAD-dependent DNA ligase LigA ligA lppK (family_assigned) — hypothetical protein lppK dnaN (family_assigned) — DNA polymerase III subunit beta dnaN polA (requalified) — DNA polymerase I polA Rv2090 (requalified) — 5'-3' exonuclease Rv2090 fadE22 (requalified) — acyl-CoA dehydrogenase fadE22 cstA (family_assigned) — carbon starvation CstA family protein cstA gmhB (requalified) — D-glycero-alpha-D-manno-heptose-1%2C7-bisphosphate gmhB xthA (requalified) — exodeoxyribonuclease III protein XthA xthA Rv1278 (family_assigned) — AAA family ATPase Rv1278 dinG (requalified) — ATP-dependent helicase DinG dinG Rv1277 (family_assigned) — hypothetical protein Rv1277 fmu (requalified) — 16S rRNA m5C967 methyltransferase fmu Rv3015c (requalified) — methionine synthase Rv3015c leuS (requalified) — leucine--tRNA ligase leuS ruvB (requalified) — Holliday junction branch migration DNA helicase Ru ruvB uvrD1 (requalified) — ATP-dependent DNA helicase UvrD uvrD1 dnaA (requalified) — chromosomal replication initiator protein DnaA dnaA helZ (requalified) — DEAD/DEAH box helicase helZ ligC (requalified) — ATP-dependent DNA ligase ligC dnaE1 (family_assigned) — DNA polymerase III subunit alpha dnaE1 Rv2413c (family_assigned) — DNA polymerase III subunit delta Rv2413c Rv3644c (family_assigned) — DNA polymerase III subunit delta' Rv3644c dnaZX (family_assigned) — DNA polymerase III subunits gamma/tau dnaZX recA (requalified) — intein-containing recombinase RecA recA Rv2529 (family_assigned) — hypothetical protein Rv2529 fadB (requalified) — fatty oxidation protein FadB fadB Rv3060c (family_assigned) — FCD domain-containing protein Rv3060c fixA (family_assigned) — electron transfer flavoprotein subunit beta/FixA f fixA chsH1 (family_assigned) — 3-oxo-23%2C24-bisnorchol-4%2C17(20)-dien-22-oyl-Co chsH1 fixB (family_assigned) — electron transfer flavoprotein subunit alpha/FixB fixB acs (requalified) — acetate--CoA ligase acs dctA (family_assigned) — cation:dicarboxylase symporter family transporter dctA Rv1188 (requalified) — proline dehydrogenase Rv1188 Rv1249c (family_assigned) — hypothetical protein Rv1249c hddA (requalified) — D-alpha-D-heptose-7-phosphate kinase HddA hddA gmhA (requalified) — D-sedoheptulose 7-phosphate isomerase gmhA gca (requalified) — GDP-mannose 4%2C6-dehydratase gca ligD (requalified) — ATP-dependent DNA ligase ligD def (requalified) — peptide deformylase def Rv0428c (family_assigned) — GNAT family N-acetyltransferase Rv0428c mutY (requalified) — A/G-specific adenine glycosylase mutY end (requalified) — deoxyribonuclease IV end Rv1279 (family_assigned) — GMC family oxidoreductase N-terminal domain-contai Rv1279 topA (requalified) — type I DNA topoisomerase topA

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.