MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3056 · 46 genes shown · open gene page → · ← back to 1 hop

Evidence: Min score 0
dinP (requalified) — DNA polymerase IV dinP dnaN (family_assigned) — DNA polymerase III subunit beta dnaN Rv3055 (family_assigned) — helix-turn-helix domain-containing protein Rv3055 lppK (family_assigned) — hypothetical protein lppK recA (requalified) — intein-containing recombinase RecA recA Rv3054c (requalified) — NADPH-dependent FMN reductase Rv3054c Rv3395c (family_assigned) — hypothetical protein Rv3395c polA (requalified) — DNA polymerase I polA helZ (requalified) — DEAD/DEAH box helicase helZ dinG (requalified) — ATP-dependent helicase DinG dinG Rv2090 (requalified) — 5'-3' exonuclease Rv2090 Rv1278 (family_assigned) — AAA family ATPase Rv1278 eccA1 (family_assigned) — type VII secretion system ESX-1 AAA family ATPase eccA1 dnaE1 (family_assigned) — DNA polymerase III subunit alpha dnaE1 Rv2413c (family_assigned) — DNA polymerase III subunit delta Rv2413c Rv3644c (family_assigned) — DNA polymerase III subunit delta' Rv3644c dnaZX (family_assigned) — DNA polymerase III subunits gamma/tau dnaZX dnaA (requalified) — chromosomal replication initiator protein DnaA dnaA moaR1 (family_assigned) — transcriptional regulator MoaR1 moaR1 Rv1725c (family_assigned) — winged helix-turn-helix transcriptional regulator Rv1725c Rv0737 (family_assigned) — MarR family transcriptional regulator Rv0737 Rv1167c (family_assigned) — TetR/AcrR family transcriptional regulator Rv1167c embR (requalified) — response regulator transcription factor EmbR embR ligC (requalified) — ATP-dependent DNA ligase ligC ligB (requalified) — ATP-dependent DNA ligase ligB recX (requalified) — recombination regulator RecX recX lexA (requalified) — transcriptional repressor LexA lexA radA (requalified) — DNA repair protein RadA radA Rv2466c (family_assigned) — Rv2466c family mycothiol-dependent reductase Rv2466c Rv3463 (requalified) — LLM class F420-dependent oxidoreductase Rv3463 Rv1251c (family_assigned) — TM0106 family RecB-like putative nuclease Rv1251c subI (family_assigned) — sulfate ABC transporter substrate-binding protein subI Rv3394c (family_assigned) — DNA polymerase Y family protein Rv3394c dnaE2 (requalified) — error-prone DNA polymerase dnaE2 dinX (requalified) — DNA polymerase IV dinX Rv3395A (family_assigned) — membrane protein Rv3395A guaA (requalified) — glutamine-hydrolyzing GMP synthase guaA Rv1277 (family_assigned) — hypothetical protein Rv1277 Rv2529 (family_assigned) — hypothetical protein Rv2529 Rv2102 (family_assigned) — hypothetical protein Rv2102 rpoZ (family_assigned) — DNA-directed RNA polymerase subunit omega rpoZ rpoA (family_assigned) — DNA-directed RNA polymerase subunit alpha rpoA rpoB (family_assigned) — DNA-directed RNA polymerase subunit beta rpoB rpoC (family_assigned) — DNA-directed RNA polymerase subunit beta' rpoC Rv2133c (family_assigned) — SCO1664 family protein Rv2133c mec (requalified) — CysO-cysteine peptidase mec

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.