MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3054c · 46 genes shown · open gene page → · ← back to 1 hop

Evidence: Min score 0
Rv3054c (requalified) — NADPH-dependent FMN reductase Rv3054c Rv3055 (family_assigned) — helix-turn-helix domain-containing protein Rv3055 dinP (requalified) — DNA polymerase IV dinP Rv2466c (family_assigned) — Rv2466c family mycothiol-dependent reductase Rv2466c Rv3463 (requalified) — LLM class F420-dependent oxidoreductase Rv3463 Rv1251c (family_assigned) — TM0106 family RecB-like putative nuclease Rv1251c subI (family_assigned) — sulfate ABC transporter substrate-binding protein subI arsC (family_assigned) — ACR3 family arsenite efflux transporter arsC cysC (requalified) — adenylyl-sulfate kinase cysC sigH (family_assigned) — sigma-70 family RNA polymerase sigma factor SigH sigH trxB2 (requalified) — thioredoxin-disulfide reductase trxB2 trxC (requalified) — thioredoxin trxC Rv0331 (requalified) — FAD/NAD(P)-binding oxidoreductase Rv0331 moaR1 (family_assigned) — transcriptional regulator MoaR1 moaR1 Rv1725c (family_assigned) — winged helix-turn-helix transcriptional regulator Rv1725c Rv0737 (family_assigned) — MarR family transcriptional regulator Rv0737 Rv1167c (family_assigned) — TetR/AcrR family transcriptional regulator Rv1167c embR (requalified) — response regulator transcription factor EmbR embR dnaN (family_assigned) — DNA polymerase III subunit beta dnaN lppK (family_assigned) — hypothetical protein lppK recA (requalified) — intein-containing recombinase RecA recA Rv3395c (family_assigned) — hypothetical protein Rv3395c rpiB (requalified) — ribose-5-phosphate isomerase B rpiB Rv2464c (family_assigned) — Fpg/Nei family DNA glycosylase Rv2464c mshD (requalified) — mycothiol synthase mshD mca (requalified) — mycothiol conjugate amidase Mca mca mshB (requalified) — N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D- mshB rmlB (requalified) — dTDP-glucose 4%2C6-dehydratase rmlB rmlC (requalified) — dTDP-4-dehydrorhamnose 3%2C5-epimerase rmlC trxB1 (requalified) — thioredoxin trxB1 infA (requalified) — translation initiation factor IF-1 infA lprE (family_assigned) — LppP/LprE family lipoprotein lprE Rv0111 (family_assigned) — acyltransferase family protein Rv0111 hsdM (requalified) — class I SAM-dependent DNA methyltransferase hsdM deaD (requalified) — DEAD/DEAH box helicase deaD Rv1254 (requalified) — acyltransferase Rv1254 Rv2345 (family_assigned) — TPM domain-containing protein Rv2345 cysA1 (family_assigned) — sulfate ABC transporter ATP-binding protein CysA cysA1 cysT (family_assigned) — sulfate ABC transporter permease subunit CysT cysT cysW (family_assigned) — sulfate ABC transporter permease subunit CysW cysW cysD (family_assigned) — sulfate adenylyltransferase subunit CysD cysD modC (family_assigned) — sulfate/molybdate ABC transporter ATP-binding prot modC Rv2642 (family_assigned) — metalloregulator ArsR/SmtB family transcription fa Rv2642 cadI (requalified) — cadmium-induced metalloenzyme CadI cadI Rv2640c (family_assigned) — Rv2640c family ArsR-like transcriptional regulator Rv2640c Rv0324 (family_assigned) — metalloregulator ArsR/SmtB family transcription fa Rv0324

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.