MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3016 · 46 genes shown · anchor ligA · open gene page → · ← back to 1 hop

Evidence: Min score 0
lpqA (family_assigned) — sensor domain-containing protein lpqA Rv3015c (requalified) — methionine synthase Rv3015c ligA (requalified) — NAD-dependent DNA ligase LigA ligA lpqQ (family_assigned) — sensor domain-containing protein lpqQ lppH (requalified) — lipoprotein LppH lppH lprH (family_assigned) — hypothetical protein lprH prsA (requalified) — ribose-phosphate diphosphokinase prsA Rv0424c (dark) — hypothetical protein Rv0424c Rv3705c (family_assigned) — sensor domain-containing protein Rv3705c Rv2781c (requalified) — nitronate monooxygenase Rv2781c lprJ (requalified) — lipoprotein LprJ lprJ lpqZ (family_assigned) — glycine betaine ABC transporter substrate-binding lpqZ lprO (family_assigned) — phosphodiester glycosidase family protein lprO Rv2172c (requalified) — mycobacterial-type methylenetetrahydrofolate reduc Rv2172c metK (requalified) — S-adenosylmethionine synthetase metK ldtMt3 (requalified) — L%2CD-transpeptidase LdtMt3 ldtMt3 Rv0192 (family_assigned) — hypothetical protein Rv0192 fmu (requalified) — 16S rRNA m5C967 methyltransferase fmu ligB (requalified) — ATP-dependent DNA ligase ligB leuS (requalified) — leucine--tRNA ligase leuS ruvB (requalified) — Holliday junction branch migration DNA helicase Ru ruvB uvrD1 (requalified) — ATP-dependent DNA helicase UvrD uvrD1 Rv3198A (requalified) — glutaredoxin protein Rv3198A Rv0556 (family_assigned) — DUF3592 domain-containing protein Rv0556 Rv0963c (family_assigned) — hypothetical protein Rv0963c Rv3577 (requalified) — hypothetical protein Rv3577 arsB2 (requalified) — arsenic transport integral membrane protein ArsB arsB2 Rv3575c (family_assigned) — LacI family DNA-binding transcriptional regulator Rv3575c Rv2060 (family_assigned) — integral membrane protein Rv2060 Rv2059 (family_assigned) — hypothetical protein Rv2059 Rv1747 (family_assigned) — ATP-binding cassette domain-containing protein Rv1747 ribH (requalified) — 6%2C7-dimethyl-8-ribityllumazine synthase ribH Rv1417 (family_assigned) — PH domain-containing protein Rv1417 ribA2 (requalified) — bifunctional 3%2C4-dihydroxy-2-butanone-4-phosphat ribA2 Rv1419 (requalified) — lectin Rv1419 Rv1413 (family_assigned) — hypothetical protein Rv1413 Rv1414 (family_assigned) — hypothetical protein Rv1414 bkdB (family_assigned) — 3-methyl-2-oxobutanoate dehydrogenase subunit beta bkdB Rv1248c (family_assigned) — multifunctional oxoglutarate decarboxylase/oxoglut Rv1248c glmU (requalified) — bifunctional UDP-N-acetylglucosamine diphosphoryla glmU tkt (requalified) — transketolase tkt rbsK (requalified) — ribokinase RbsK rbsK purF (requalified) — amidophosphoribosyltransferase purF Rv0426c (dark) — hypothetical protein Rv0426c ctpH (requalified) — cation-translocating P-type ATPase ctpH thiC (requalified) — phosphomethylpyrimidine synthase ThiC thiC

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.