MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv2994 · 46 genes shown · open gene page → · ← back to 1 hop

Evidence: Min score 0
Rv2994 (requalified) — MFS-type transporter Rv2994 Rv2993c (requalified) — 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase Rv2993c gltS (requalified) — glutamate--tRNA ligase gltS Rv1773c (family_assigned) — IclR family transcriptional regulator Rv1773c lipC (requalified) — esterase LipC lipC php (requalified) — phosphotriesterase-related protein php Rv2957 (requalified) — PGL/p-HBAD biosynthesis glycosyltransferase Rv2957 PPE55 (family_assigned) — PPE family protein PPE55 PPE55 Rv2958c (requalified) — PGL/p-HBAD biosynthesis glycosyltransferase Rv2958c aldC (requalified) — aldehyde dehydrogenase AldC aldC rocA (requalified) — L-glutamate gamma-semialdehyde dehydrogenase rocA pcd (requalified) — piperideine-6-carboxylic acid dehydrogenase pcd aldA (requalified) — aldehyde dehydrogenase aldA rplW (requalified) — 50S ribosomal protein L23 rplW rplR (requalified) — 50S ribosomal protein L18 rplR rplF (requalified) — 50S ribosomal protein L6 rplF rplV (requalified) — 50S ribosomal protein L22 rplV rplM (requalified) — 50S ribosomal protein L13 rplM rplJ (requalified) — 50S ribosomal protein L10 rplJ Rv0494 (family_assigned) — HTH-type transcriptional regulator Rv0494 mftR (family_assigned) — mycofactocin system transcriptional regulator mftR Rv1776c (family_assigned) — TetR/AcrR family transcriptional regulator Rv1776c Rv0377 (family_assigned) — LysR family transcriptional regulator Rv0377 embR (requalified) — response regulator transcription factor EmbR embR Rv1931c (family_assigned) — transcriptional regulator Rv1931c Rv0218 (requalified) — molybdopterin-dependent oxidoreductase Rv0218 lipW (family_assigned) — alpha/beta hydrolase lipW Rv0221 (family_assigned) — wax ester/triacylglycerol synthase family O-acyltr Rv0221 Rv0219 (dark) — hypothetical protein Rv0219 echA1 (family_assigned) — crotonase/enoyl-CoA hydratase family protein echA1 Rv0310c (family_assigned) — nuclear transport factor 2 family protein Rv0310c Rv0229c (family_assigned) — PIN domain nuclease Rv0229c Rv0232 (family_assigned) — TetR/AcrR family transcriptional regulator Rv0232 fadE4 (family_assigned) — acyl-CoA dehydrogenase family protein fadE4 nrdB (requalified) — R2-like ligand-binding oxidase nrdB Rv2250A (family_assigned) — Possible flavoprotein Rv2250A Rv1635c (family_assigned) — glycosyltransferase family 39 protein Rv1635c Rv2956 (requalified) — [alpha-L-fucopyranosyl-(1->3)-alpha-L-rhamnopyrano Rv2956 Rv1516c (requalified) — glycosyltransferase Rv1516c Rv1520 (requalified) — glycosyltransferase Rv1520 epiA (requalified) — GDP-L-fucose synthase epiA Rv2955c (requalified) — [2-O-methyl-alpha-L-fucopyranosyl-(1->3)-alpha-L-r Rv2955c PPE8 (family_assigned) — PPE family protein PPE8 PPE8 PPE56 (family_assigned) — PPE family protein PPE56 PPE56 cpnT (requalified) — outer membrane channel protein/necrotizing toxin g cpnT Rv2082 (dark) — DUF5631 domain-containing protein Rv2082

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.