MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv2901c · 46 genes shown · anchor rnhB · open gene page → · ← back to 1 hop

Evidence: Min score 0
Rv2901c (dark) — DUF2469 domain-containing protein Rv2901c rnhB (requalified) — ribonuclease HII rnhB lepB (requalified) — signal peptidase I lepB whiB1 (family_assigned) — transcriptional regulator WhiB1 whiB1 whiB2 (family_assigned) — transcriptional regulator WhiB2 whiB2 rplS (requalified) — 50S ribosomal protein L19 rplS rpoZ (family_assigned) — DNA-directed RNA polymerase subunit omega rpoZ secG (family_assigned) — preprotein translocase subunit SecG secG Rv1830 (family_assigned) — HTH-type transcriptional regulator Rv1830 whiB4 (family_assigned) — transcriptional regulator WhiB4 whiB4 fdhF (family_assigned) — FdhF/YdeP family oxidoreductase fdhF fdhD (requalified) — formate dehydrogenase accessory sulfurtransferase fdhD whiB3 (family_assigned) — redox-responsive transcriptional regulator WhiB3 whiB3 dnaN (family_assigned) — DNA polymerase III subunit beta dnaN lppK (family_assigned) — hypothetical protein lppK coaE (requalified) — dephospho-CoA kinase coaE atpE (family_assigned) — F0F1 ATP synthase subunit C atpE rpmD (requalified) — 50S ribosomal protein L30 rpmD ligD (requalified) — ATP-dependent DNA ligase ligD sigA (requalified) — RNA polymerase sigma factor sigA sigB (family_assigned) — sigma-70 family RNA polymerase sigma factor SigB sigB Rv1321 (requalified) — endonuclease NucS Rv1321 clpS (requalified) — ATP-dependent Clp protease adapter ClpS clpS rpsR1 (requalified) — 30S ribosomal protein S18 rpsR1 rplB (requalified) — 50S ribosomal protein L2 rplB rpsH (requalified) — 30S ribosomal protein S8 rpsH rpmH (requalified) — 50S ribosomal protein L34 rpmH rpsF (requalified) — 30S ribosomal protein S6 rpsF rplP (requalified) — 50S ribosomal protein L16 rplP rpoA (family_assigned) — DNA-directed RNA polymerase subunit alpha rpoA rpoC (family_assigned) — DNA-directed RNA polymerase subunit beta' rpoC rpoB (family_assigned) — DNA-directed RNA polymerase subunit beta rpoB rbpA (family_assigned) — RNA polymerase-binding protein RbpA rbpA helZ (requalified) — DEAD/DEAH box helicase helZ secE1 (requalified) — preprotein translocase SecE secE1 secY (family_assigned) — preprotein translocase subunit SecY secY yidC (requalified) — membrane protein insertase YidC yidC secA1 (family_assigned) — protein translocase subunit SecA secA1 secA2 (requalified) — accessory Sec system translocase SecA2 secA2 ftsY (requalified) — signal recognition particle-docking protein FtsY ftsY Rv2699c (dark) — DUF4193 domain-containing protein Rv2699c apt (requalified) — adenine phosphoribosyltransferase apt Rv0525 (family_assigned) — histidine phosphatase family protein Rv0525 qcrC (requalified) — cytochrome c qcrC tuf (requalified) — elongation factor Tu tuf Rv2898c (family_assigned) — YraN family protein Rv2898c

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.