MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv2900c · 46 genes shown · anchor fdhD · open gene page → · ← back to 1 hop

Evidence: Min score 0
fdhF (family_assigned) — FdhF/YdeP family oxidoreductase fdhF fdhD (requalified) — formate dehydrogenase accessory sulfurtransferase fdhD qcrC (requalified) — cytochrome c qcrC tuf (requalified) — elongation factor Tu tuf Rv2901c (dark) — DUF2469 domain-containing protein Rv2901c Rv2898c (family_assigned) — YraN family protein Rv2898c Rv2897c (family_assigned) — YifB family Mg chelatase-like AAA ATPase Rv2897c gltB (family_assigned) — glutamate synthase large subunit gltB dprA (requalified) — DNA-processing protein DprA dprA rnhB (requalified) — ribonuclease HII rnhB qcrA (requalified) — ubiquinol-cytochrome c reductase iron-sulfur subun qcrA lepB (requalified) — signal peptidase I lepB viuB (requalified) — siderophore-interacting protein viuB hycE (family_assigned) — NADH-quinone oxidoreductase subunit C hycE ctaC (family_assigned) — cytochrome c oxidase subunit II ctaC ctaD (family_assigned) — cytochrome c oxidase subunit I ctaD qcrB (family_assigned) — cytochrome bc complex cytochrome b subunit qcrB Rv2199c (family_assigned) — cytochrome c oxidase subunit 4 Rv2199c ctaE (family_assigned) — heme-copper oxidase subunit III ctaE rpsL (requalified) — 30S ribosomal protein S12 rpsL tsf (requalified) — translation elongation factor Ts tsf rpsE (requalified) — 30S ribosomal protein S5 rpsE rplB (requalified) — 50S ribosomal protein L2 rplB rplO (requalified) — 50S ribosomal protein L15 rplO rpsJ (requalified) — 30S ribosomal protein S10 rpsJ whiB1 (family_assigned) — transcriptional regulator WhiB1 whiB1 whiB2 (family_assigned) — transcriptional regulator WhiB2 whiB2 rplS (requalified) — 50S ribosomal protein L19 rplS rpoZ (family_assigned) — DNA-directed RNA polymerase subunit omega rpoZ Rv1364c (family_assigned) — sigma factor regulatory protein Rv1364c Rv1354c (requalified) — bifunctional diguanylate cyclase/phosphodiesterase Rv1354c Rv2414c (family_assigned) — ComEC/Rec2 family competence protein Rv2414c gltD (family_assigned) — glutamate synthase subunit beta gltD fprA (requalified) — ferredoxin--NADP(+) reductase FprA fprA fadH (requalified) — NADPH-dependent 2%2C4-dienoyl-CoA reductase fadH fprB (requalified) — FAD-dependent oxidoreductase fprB carB (family_assigned) — carbamoyl-phosphate synthase large subunit carB glnA1 (requalified) — type I glutamate--ammonia ligase glnA1 Rv2551c (family_assigned) — A24 family peptidase Rv2551c Rv3242c (family_assigned) — ComF family protein Rv3242c dnaN (family_assigned) — DNA polymerase III subunit beta dnaN lppK (family_assigned) — hypothetical protein lppK coaE (requalified) — dephospho-CoA kinase coaE atpE (family_assigned) — F0F1 ATP synthase subunit C atpE rpmD (requalified) — 50S ribosomal protein L30 rpmD ligD (requalified) — ATP-dependent DNA ligase ligD

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.