MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv2888c · 46 genes shown · anchor gatB · open gene page → · ← back to 1 hop

Evidence: Min score 0
amiC (requalified) — amidase amiC gatB (family_assigned) — Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subun gatB tsf (requalified) — translation elongation factor Ts tsf acyP (requalified) — acylphosphatase acyP Rv3551 (family_assigned) — CoA transferase subunit A Rv3551 rpsB (requalified) — 30S ribosomal protein S2 rpsB gatC (family_assigned) — Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subun gatC Rv3672c (requalified) — CoA pyrophosphatase Rv3672c Rv2891 (family_assigned) — hypothetical protein Rv2891 pcd (requalified) — piperideine-6-carboxylic acid dehydrogenase pcd Rv0223c (requalified) — aldehyde dehydrogenase Rv0223c Rv0147 (requalified) — aldehyde dehydrogenase Rv0147 aldA (requalified) — aldehyde dehydrogenase aldA gatA (family_assigned) — Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subun gatA aspS (requalified) — aspartate--tRNA ligase aspS amiD (requalified) — amidase amiD amiA2 (requalified) — amidase amiA2 amiB2 (requalified) — amidase amiB2 tuf (requalified) — elongation factor Tu tuf atpH (family_assigned) — F0F1 ATP synthase subunit B/delta atpH rpsI (requalified) — 30S ribosomal protein S9 rpsI frr (requalified) — ribosome recycling factor frr rplM (requalified) — 50S ribosomal protein L13 rplM pta (requalified) — phosphate acetyltransferase pta Rv3175 (requalified) — amidase Rv3175 Rv3552 (family_assigned) — CoA-transferase subunit beta Rv3552 echA20 (family_assigned) — enoyl-CoA hydratase family protein echA20 Rv3553 (requalified) — nitronate monooxygenase Rv3553 Rv3549c (family_assigned) — SDR family oxidoreductase Rv3549c Rv3548c (family_assigned) — SDR family oxidoreductase Rv3548c fadE30 (family_assigned) — acyl-CoA dehydrogenase family protein fadE30 rpsR2 (requalified) — 30S ribosomal protein S18 rpsR2 rpsG (requalified) — 30S ribosomal protein S7 rpsG rpsH (requalified) — 30S ribosomal protein S8 rpsH rpsF (requalified) — 30S ribosomal protein S6 rpsF rpsC (requalified) — 30S ribosomal protein S3 rpsC Rv3433c (requalified) — NAD(P)H-hydrate dehydratase Rv3433c marP (requalified) — acid resistance serine protease MarP marP Rv3673c (family_assigned) — membrane-anchored thioredoxin-like protein Rv3673c rhlE (requalified) — DEAD/DEAH box helicase rhlE deaD (requalified) — DEAD/DEAH box helicase deaD eccC4 (family_assigned) — type VII secretion system ESX-4 FtsK/SpoIIIE famil eccC4 Rv0745 (family_assigned) — hypothetical protein Rv0745 Rv3446c (family_assigned) — type VII secretion-associated protein Rv3446c mycP4 (requalified) — type VII secretion system ESX-4 serine protease my mycP4 Rv3292 (family_assigned) — VOC family protein Rv3292

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.