MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv2887 · 45 genes shown · open gene page → · ← back to 1 hop

Evidence: Min score 0
Rv2887 (family_assigned) — MarR family transcriptional regulator Rv2887 Rv2885c (requalified) — transposase Rv2885c Rv2886c (requalified) — resolvase Rv2886c Rv2327 (family_assigned) — MarR family winged helix-turn-helix transcriptiona Rv2327 Rv3095 (family_assigned) — helix-turn-helix domain-containing protein Rv3095 Rv0880 (family_assigned) — MarR family transcriptional regulator Rv0880 Rv0560c (requalified) — benzoquinone methyltransferase Rv0560c Rv3094c (family_assigned) — acyl-CoA dehydrogenase family protein Rv3094c Rv1405c (requalified) — virulence-associated methyltransferase Rv1405c Rv1404 (family_assigned) — MarR family transcriptional regulator Rv1404 Rv2979c (family_assigned) — IS607 family transposase Rv2979c Rv0605 (family_assigned) — IS607-like element IS1536 family transposase Rv0605 Rv3828c (requalified) — resolvase Rv3828c tnpB (family_assigned) — IS607 family element RNA-guided endonuclease TnpB tnpB Rv2792c (family_assigned) — IS607-like element IS1537 family transposase Rv2792c tnpB (family_assigned) — IS607 family element RNA-guided endonuclease TnpB tnpB Rv3827c (requalified) — transposase Rv3827c tnpB (family_assigned) — IS607 family element RNA-guided endonuclease TnpB tnpB Rv2326c (family_assigned) — ABC transporter ATP-binding protein Rv2326c Rv2325c (family_assigned) — CbiQ family ECF transporter T component Rv2325c Rv1510 (family_assigned) — hypothetical protein Rv1510 Rv3630 (family_assigned) — hypothetical protein Rv3630 lpqZ (family_assigned) — glycine betaine ABC transporter substrate-binding lpqZ PE23 (family_assigned) — PE family protein PE23 PE23 Rv3093c (requalified) — LLM class F420-dependent oxidoreductase Rv3093c Rv3092c (family_assigned) — DUF808 domain-containing protein Rv3092c Rv3096 (requalified) — 1%2C4-beta-xylanase Rv3096 Rv2405 (family_assigned) — hypothetical protein Rv2405 Rv1931c (family_assigned) — transcriptional regulator Rv1931c Rv0882 (dark) — DUF2537 domain-containing protein Rv0882 Rv0881 (requalified) — RNA methyltransferase Rv0881 Rv0879c (family_assigned) — DUF2530 domain-containing protein Rv0879c Rv2175c (family_assigned) — DNA-binding protein Rv2175c Rv0744c (family_assigned) — helix-turn-helix domain-containing protein Rv0744c Rv0653c (family_assigned) — TetR/AcrR family transcriptional regulator Rv0653c Rv3160c (family_assigned) — helix-turn-helix domain-containing protein Rv3160c menJ (requalified) — menaquinone reductase menJ Rv0559c (family_assigned) — DUF732 domain-containing protein Rv0559c grcC1 (requalified) — polyprenyl-diphosphate synthase GrcC grcC1 eccD3 (family_assigned) — type VII secretion system ESX-3 subunit EccD3 eccD3 mmpL5 (requalified) — siderophore RND transporter MmpL5 mmpL5 fadB (requalified) — fatty oxidation protein FadB fadB fixB (family_assigned) — electron transfer flavoprotein subunit alpha/FixB fixB fixA (family_assigned) — electron transfer flavoprotein subunit beta/FixA f fixA fmt (requalified) — methionyl-tRNA formyltransferase fmt

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.