MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv2870c · 38 genes shown · anchor ispD · open gene page → · ← back to 1 hop

Evidence: Min score 0
dxr (requalified) — 1-deoxy-D-xylulose-5-phosphate reductoisomerase dxr ispD (requalified) — 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans ispD dxs1 (requalified) — 1-deoxy-D-xylulose 5-phosphate synthase dxs1 dxs2 (requalified) — 1-deoxy-D-xylulose-5-phosphate synthase dxs2 gcpE (requalified) — flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-e gcpE rip (requalified) — zinc metalloprotease Rip rip Rv2867c (family_assigned) — GNAT family N-acetyltransferase Rv2867c ispF (requalified) — 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate syn ispF lytB2 (requalified) — 4-hydroxy-3-methylbut-2-enyl diphosphate reductase lytB2 Rv3382c (requalified) — 4-hydroxy-3-methylbut-2-enyl diphosphate reductase Rv3382c ispE (requalified) — 4-diphosphocytidyl-2C-methyl-D-erythritol kinase ispE Rv2361c (requalified) — decaprenyl diphosphate synthase Rv2361c cdsA (requalified) — phosphatidate cytidylyltransferase cdsA carD (requalified) — RNA polymerase-binding transcription factor CarD carD rlmB (requalified) — 23S rRNA (guanosine(2251)-2'-O)-methyltransferase rlmB cysS1 (requalified) — cysteine--tRNA ligase cysS1 thiG (requalified) — thiazole synthase thiG Rv3378c (requalified) — diterpene synthase Rv3378c Rv3377c (requalified) — type B diterpene cyclase Rv3377c mpt83 (requalified) — cell surface glycolipoprotein Mpt83 mpt83 mpa (requalified) — proteasome ATPase mpa Rv1488 (family_assigned) — SPFH domain-containing protein Rv1488 Rv2239c (family_assigned) — hypothetical protein Rv2239c rpsA (requalified) — 30S ribosomal protein S1 rpsA idsA2 (requalified) — bifunctional (2E%2C6E)-farnesyl/geranyl diphosphat idsA2 idsA1 (requalified) — multifunctional dimethylallyltransferase/geranyltr idsA1 idsB (family_assigned) — polyprenyl synthetase family protein idsB ksgA (requalified) — 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-d ksgA Rv1086 (family_assigned) — undecaprenyl diphosphate synthase family protein Rv1086 Rv2360c (family_assigned) — hypothetical protein Rv2360c recO (requalified) — DNA repair protein RecO recO amiA2 (requalified) — amidase amiA2 pgsA3 (requalified) — CDP-diacylglycerol--glycerol-3-phosphate 3-phospha pgsA3 pssA (requalified) — CDP-diacylglycerol--serine O-phosphatidyltransfera pssA pgsA1 (requalified) — CDP-diacylglycerol--inositol 3-phosphatidyltransfe pgsA1 Rv2182c (family_assigned) — lysophospholipid acyltransferase family protein Rv2182c Rv2252 (requalified) — diacylglycerol kinase Rv2252 pgsA2 (family_assigned) — CDP-alcohol phosphatidyltransferase family protein pgsA2

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.