MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv2816c · 36 genes shown · anchor cas1 · open gene page → · ← back to 1 hop

Evidence: Min score 0
cas2 (requalified) — CRISPR-associated endonuclease Cas2 cas2 cas1 (requalified) — CRISPR-associated endonuclease Cas1 cas1 cas10 (requalified) — type III-A CRISPR-associated protein Cas10/Csm1 cas10 csm3 (requalified) — type III-A CRISPR-associated RAMP protein Csm3 csm3 csm4 (requalified) — type III-A CRISPR-associated RAMP protein Csm4 csm4 Rv2824c (requalified) — CRISPR-associated endoribonuclease Cas6 Rv2824c csm5 (requalified) — type III-A CRISPR-associated RAMP protein Csm5 csm5 csm2 (requalified) — type III-A CRISPR-associated protein Csm2 csm2 Rv0071 (family_assigned) — reverse transcriptase domain-containing protein Rv0071 Rv2818c (requalified) — CRISPR-associated protein Csm6 Rv2818c Rv2825c (dark) — hypothetical protein Rv2825c Rv2949c (family_assigned) — chorismate pyruvate-lyase family protein Rv2949c hupB (family_assigned) — DNA-binding protein HupB hupB Rv3428c (requalified) — transposase Rv3428c Rv2424c (requalified) — transposase Rv2424c Rv2177c (requalified) — transposase Rv2177c istB (family_assigned) — IS21-like element ISMt2 family helper ATPase IstB istB Rv2944 (requalified) — insertion sequence element IS1533 transposase Rv2944 Rv2828c (family_assigned) — DUF1802 family protein Rv2828c Rv3779 (family_assigned) — DUF6541 family protein Rv3779 Rv0048c (family_assigned) — DUF1707 domain-containing protein Rv0048c Rv0517 (requalified) — acyltransferase Rv0517 Rv0875c (dark) — DUF2771 domain-containing protein Rv0875c Rv2827c (family_assigned) — type IV toxin-antitoxin system AbiEi family antito Rv2827c fadD22 (requalified) — p-hydroxybenzoic acid--AMP ligase FadD22 fadD22 fadD29 (requalified) — long-chain-fatty-acid--AMP ligase FadD29 fadD29 pks15 (requalified) — polyketide synthase pks15 entC (requalified) — isochorismate synthase entC Rv0948c (requalified) — chorismate mutase Rv0948c Rv1885c (requalified) — chorismate mutase Rv1885c rpsO (requalified) — 30S ribosomal protein S15 rpsO rpsT (requalified) — 30S ribosomal protein S20 rpsT pheT (family_assigned) — phenylalanine--tRNA ligase subunit beta pheT rplS (requalified) — 50S ribosomal protein L19 rplS tuf (requalified) — elongation factor Tu tuf leuD (family_assigned) — 3-isopropylmalate dehydratase small subunit leuD

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.