MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv2784c · 40 genes shown · anchor rpsO · open gene page → · ← back to 1 hop

Evidence: Min score 0
lppU (dark) — hypothetical protein lppU rpsO (requalified) — 30S ribosomal protein S15 rpsO ribF (requalified) — bifunctional riboflavin kinase /FMN adenylyltransf ribF gpsI (requalified) — polyribonucleotide nucleotidyltransferase gpsI pepR (family_assigned) — pitrilysin family protein pepR Rv2781c (requalified) — nitronate monooxygenase Rv2781c sirR (family_assigned) — manganese-binding transcriptional regulator MntR sirR rplR (requalified) — 50S ribosomal protein L18 rplR rpmA (requalified) — 50S ribosomal protein L27 rpmA rpmE (requalified) — 50S ribosomal protein L31 rpmE rplY (requalified) — 50S ribosomal protein L25/general stress protein C rplY rpmG2 (requalified) — 50S ribosomal protein L33 rpmG2 rplU (requalified) — 50S ribosomal protein L21 rplU ribC (requalified) — riboflavin synthase ribC ribH (requalified) — 6%2C7-dimethyl-8-ribityllumazine synthase ribH truB (requalified) — tRNA pseudouridine(55) synthase TruB truB cmk (requalified) — (d)CMP kinase cmk rhlE (requalified) — DEAD/DEAH box helicase rhlE rplD (requalified) — 50S ribosomal protein L4 rplD rplC (requalified) — 50S ribosomal protein L3 rplC rho (requalified) — transcription termination factor Rho rho rplT (requalified) — 50S ribosomal protein L20 rplT qcrA (requalified) — hypothetical protein qcrA qcrB (family_assigned) — cytochrome bc complex cytochrome b subunit qcrB nuoF (family_assigned) — NADH-quinone oxidoreductase subunit NuoF nuoF nuoG (family_assigned) — NADH-quinone oxidoreductase subunit G nuoG nuoI (family_assigned) — NADH-quinone oxidoreductase subunit NuoI nuoI nuoE (family_assigned) — NADH-quinone oxidoreductase subunit NuoE nuoE Rv0021c (family_assigned) — nitronate monooxygenase family protein Rv0021c narU (family_assigned) — NarK family nitrate/nitrite MFS transporter narU narK3 (requalified) — nitrate/nitrite transporter narK3 narK2 (requalified) — nitrate transporter NarK narK2 narK1 (requalified) — nitrate/nitrite transporter narK1 narI (family_assigned) — respiratory nitrate reductase subunit gamma narI Rv1725c (family_assigned) — winged helix-turn-helix transcriptional regulator Rv1725c Rv3066 (family_assigned) — TetR/AcrR family transcriptional regulator Rv3066 sigJ (family_assigned) — sigma-70 family RNA polymerase sigma factor SigJ sigJ Rv2488c (family_assigned) — LuxR family transcriptional regulator Rv2488c Rv1019 (family_assigned) — TetR/AcrR family transcriptional regulator Rv1019 Rv0273c (family_assigned) — TetR/AcrR family transcriptional regulator Rv0273c

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.