MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv2710 · 36 genes shown · anchor rpoA · open gene page → · ← back to 1 hop

Evidence: Min score 0
sigB (family_assigned) — sigma-70 family RNA polymerase sigma factor SigB sigB rpoB (family_assigned) — DNA-directed RNA polymerase subunit beta rpoB rpoC (family_assigned) — DNA-directed RNA polymerase subunit beta' rpoC rpoA (family_assigned) — DNA-directed RNA polymerase subunit alpha rpoA rpoZ (family_assigned) — DNA-directed RNA polymerase subunit omega rpoZ rbpA (family_assigned) — RNA polymerase-binding protein RbpA rbpA ideR (family_assigned) — iron-dependent transcriptional regulator IdeR ideR whiB1 (family_assigned) — transcriptional regulator WhiB1 whiB1 whiB7 (family_assigned) — transcriptional regulator WhiB7 whiB7 zur (requalified) — zinc uptake transcriptional repressor Zur zur 35kd_ag (family_assigned) — hypothetical protein 35kd_ag dnaG (requalified) — DNA primase dnaG carD (requalified) — RNA polymerase-binding transcription factor CarD carD sigA (requalified) — RNA polymerase sigma factor sigA sigL (family_assigned) — sigma-70 family RNA polymerase sigma factor SigL sigL rpsM (requalified) — 30S ribosomal protein S13 rpsM rpsH (requalified) — 30S ribosomal protein S8 rpsH helZ (requalified) — DEAD/DEAH box helicase helZ pepD (requalified) — serine protease PepD pepD Rv2917 (family_assigned) — hypothetical protein Rv2917 Rv2709 (dark) — DUF3099 domain-containing protein Rv2709 gltB (family_assigned) — glutamate synthase large subunit gltB Rv1830 (family_assigned) — HTH-type transcriptional regulator Rv1830 Rv2901c (dark) — DUF2469 domain-containing protein Rv2901c secG (family_assigned) — preprotein translocase subunit SecG secG smtB (family_assigned) — metalloregulator ArsR/SmtB family transcription fa smtB sufR (family_assigned) — suf operon transcriptional regulator SufR sufR clgR (family_assigned) — transcriptional regulator ClgR clgR Rv2743c (family_assigned) — hypothetical protein Rv2743c htpX (requalified) — zinc metalloprotease HtpX htpX Rv2468c (requalified) — hypothetical protein Rv2468c Rv2179c (requalified) — polyadenylate-specific 3'-exoribonuclease AS Rv2179c dnaB (requalified) — replicative DNA helicase dnaB dgt (requalified) — deoxyguanosinetriphosphate triphosphohydrolase dgt engA (requalified) — ribosome biogenesis GTPase Der engA rphA (requalified) — ribonuclease PH rphA

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.