MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv2535c · 46 genes shown · anchor efp · open gene page → · ← back to 1 hop

Evidence: Min score 0
pepQ (family_assigned) — Xaa-Pro peptidase family protein pepQ efp (requalified) — elongation factor P efp Rv2532c (requalified) — antitermination protein NusB Rv2532c nusB (requalified) — transcription antitermination factor NusB nusB Rv2536 (family_assigned) — B-4DMT family transporter Rv2536 Rv2531c (requalified) — amino acid decarboxylase Rv2531c nadE (requalified) — NAD(+) synthase nadE aroD (requalified) — type II 3-dehydroquinate dehydratase aroD Rv0480c (family_assigned) — carbon-nitrogen hydrolase family protein Rv0480c serA1 (requalified) — D-3-phosphoglycerate dehydrogenase serA1 vapB39 (requalified) — antitoxin VapB39 vapB39 vapC39 (family_assigned) — type II toxin-antitoxin system VapC family toxin vapC39 trpS (requalified) — tryptophan--tRNA ligase trpS rpsQ (requalified) — 30S ribosomal protein S17 rpsQ rplR (requalified) — 50S ribosomal protein L18 rplR rplV (requalified) — 50S ribosomal protein L22 rplV rplM (requalified) — 50S ribosomal protein L13 rplM rpsD (requalified) — 30S ribosomal protein S4 rpsD rpsJ (requalified) — 30S ribosomal protein S10 rpsJ nusA (requalified) — transcription termination factor NusA nusA rpoZ (family_assigned) — DNA-directed RNA polymerase subunit omega rpoZ arcA (requalified) — arginine deiminase arcA argH (requalified) — argininosuccinate lyase argH Rv1722 (requalified) — biotin carboxylase Rv1722 vapC11 (requalified) — type II toxin-antitoxin system toxin ribonuclease vapC11 nadR (requalified) — nicotinamide-nucleotide adenylyltransferase nadR nadD (requalified) — nicotinate-nucleotide adenylyltransferase nadD cobB (requalified) — NAD-dependent protein deacylase cobB ppnK (requalified) — NAD kinase ppnK sthA (requalified) — Si-specific NAD(P)(+) transhydrogenase sthA nudC (requalified) — NAD(+) diphosphatase nudC aroB (requalified) — 3-dehydroquinate synthase aroB aroE (requalified) — shikimate dehydrogenase aroE aroK (requalified) — shikimate kinase AroK aroK aroF (requalified) — chorismate synthase aroF mbtI (requalified) — salicylate synthase mbtI entC (requalified) — isochorismate synthase entC Rv0479c (family_assigned) — DUF2993 domain-containing protein Rv0479c Rv0481c (family_assigned) — DUF2505 domain-containing protein Rv0481c murB (requalified) — UDP-N-acetylmuramate dehydrogenase murB lprQ (requalified) — L%2CD-transpeptidase LdtMt5 lprQ pgmA (requalified) — phosphoglucomutase (alpha-D-glucose-1%2C6-bisphosp pgmA icd1 (requalified) — NADP-dependent isocitrate dehydrogenase icd1 serC (requalified) — phosphoserine transaminase serC leuB (requalified) — 3-isopropylmalate dehydrogenase leuB serA2 (requalified) — D-3-phosphoglycerate dehydrogenase SerA serA2

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.