MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv2444c · 46 genes shown · anchor rplU · open gene page → · ← back to 1 hop

Evidence: Min score 0
rne (family_assigned) — Rne/Rng family ribonuclease rne gpsI (requalified) — polyribonucleotide nucleotidyltransferase gpsI eno (requalified) — phosphopyruvate hydratase eno phoH2 (family_assigned) — PhoH family protein phoH2 rapZ (requalified) — RNase adapter RapZ rapZ rphA (requalified) — ribonuclease PH rphA rplU (requalified) — 50S ribosomal protein L21 rplU proB (requalified) — glutamate 5-kinase proB Rv3920c (family_assigned) — R3H domain-containing nucleic acid-binding protein Rv3920c ndkA (requalified) — nucleoside-diphosphate kinase ndkA rpmA (requalified) — 50S ribosomal protein L27 rpmA rnpA (requalified) — ribonuclease P protein component rnpA alaS (requalified) — alanine--tRNA ligase alaS rhlE (requalified) — DEAD/DEAH box helicase rhlE rplD (requalified) — 50S ribosomal protein L4 rplD pepR (family_assigned) — pitrilysin family protein pepR rplC (requalified) — 50S ribosomal protein L3 rplC rho (requalified) — transcription termination factor Rho rho rplT (requalified) — 50S ribosomal protein L20 rplT pykA (requalified) — pyruvate kinase pykA pgk (requalified) — phosphoglycerate kinase pgk gpm1 (requalified) — 2,3-bisphosphoglycerate-dependent phosphoglycerate gpm1 pgi (requalified) — glucose-6-phosphate isomerase pgi gap (requalified) — type I glyceraldehyde-3-phosphate dehydrogenase gap fba (requalified) — class II fructose-bisphosphate aldolase fba Rv1096 (family_assigned) — polysaccharide deacetylase family protein Rv1096 desA2 (requalified) — acyl-ACP desaturase desA2 Rv0513 (family_assigned) — DUF3093 domain-containing protein Rv0513 Rv0528 (requalified) — cytochrome c biogenesis protein ResB Rv0528 napA (requalified) — DUF3263 domain-containing protein napA cuvA (requalified) — carbon utilization/virulence protein CuvA cuvA whiA (family_assigned) — DNA-binding protein WhiA whiA uvrC (family_assigned) — excinuclease ABC subunit UvrC uvrC Rv1417 (family_assigned) — PH domain-containing protein Rv1417 fbiA (requalified) — 2-phospho-L-lactate transferase fbiA ribA2 (requalified) — bifunctional 3%2C4-dihydroxy-2-butanone-4-phosphat ribA2 rdgB (family_assigned) — RdgB/HAM1 family non-canonical purine NTP pyrophos rdgB Rv2681 (requalified) — ribonuclease D Rv2681 rpsA (requalified) — 30S ribosomal protein S1 rpsA Rv1339 (family_assigned) — hypothetical protein Rv1339 rpsD (requalified) — 30S ribosomal protein S4 rpsD rpsK (requalified) — 30S ribosomal protein S11 rpsK rpmG2 (requalified) — 50S ribosomal protein L33 rpmG2 rplY (requalified) — 50S ribosomal protein L25/general stress protein C rplY rpmE (requalified) — 50S ribosomal protein L31 rpmE rplR (requalified) — 50S ribosomal protein L18 rplR

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.