MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv2388c · 46 genes shown · anchor rpfD · open gene page → · ← back to 1 hop

Evidence: Min score 0
hemN (requalified) — oxygen-independent coproporphyrinogen III oxidase hemN rpfD (requalified) — resuscitation-promoting factor protein RpfD rpfD Rv2390c (family_assigned) — hypothetical protein Rv2390c Rv2879c (family_assigned) — Conserved hypothetical protein Rv2879c hemE (requalified) — uroporphyrinogen decarboxylase hemE gltB (family_assigned) — glutamate synthase large subunit gltB Rv2880c (family_assigned) — Conserved hypothetical protein Rv2880c gpsI (requalified) — polyribonucleotide nucleotidyltransferase gpsI ppk2 (requalified) — polyphosphate kinase ppk2 sirA (requalified) — sulfite reductase sirA cysH (requalified) — phosphoadenylyl-sulfate reductase cysH Rv0213c (requalified) — methyltransferase Rv0213c Rv2148c (family_assigned) — YggS family pyridoxal phosphate-dependent enzyme Rv2148c Rv1954A (dark) — Hypothetical protein Rv1954A Rv0007 (dark) — DUF3566 domain-containing protein Rv0007 Rv2466c (family_assigned) — Rv2466c family mycothiol-dependent reductase Rv2466c Rv2286c (family_assigned) — DsbA family protein Rv2286c Rv3492c (requalified) — Mce associated protein Rv3492c pks5 (requalified) — sulfolipid-1 biosynthesis phthioceranic/hydroxypht pks5 pks2 (requalified) — phthioceranic/hydroxyphthioceranic acid synthase pks2 pks12 (requalified) — type I polyketide synthase pks12 ppsC (requalified) — phthiocerol type I polyketide synthase PpsC ppsC fmu (requalified) — 16S rRNA m5C967 methyltransferase fmu cdsA (requalified) — phosphatidate cytidylyltransferase cdsA frr (requalified) — ribosome recycling factor frr miaB (requalified) — tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiot miaB hemY (requalified) — protoporphyrinogen oxidase hemY hemC (requalified) — hydroxymethylbilane synthase hemC hemZ (requalified) — ferrochelatase hemZ hemD (requalified) — uroporphyrin-III C-methyltransferase hemD hemQ (requalified) — hydrogen peroxide-dependent heme synthase hemQ cysG (requalified) — uroporphyrinogen-III C-methyltransferase cysG gltD (family_assigned) — glutamate synthase subunit beta gltD fprA (requalified) — ferredoxin--NADP(+) reductase FprA fprA fadH (requalified) — NADPH-dependent 2%2C4-dienoyl-CoA reductase fadH fprB (requalified) — FAD-dependent oxidoreductase fprB carB (family_assigned) — carbamoyl-phosphate synthase large subunit carB glnA1 (requalified) — type I glutamate--ammonia ligase glnA1 Rv2877c (family_assigned) — integral membrane protein Rv2877c rhlE (requalified) — DEAD/DEAH box helicase rhlE rplD (requalified) — 50S ribosomal protein L4 rplD pepR (family_assigned) — pitrilysin family protein pepR rplC (requalified) — 50S ribosomal protein L3 rplC rho (requalified) — transcription termination factor Rho rho rplT (requalified) — 50S ribosomal protein L20 rplT ppk1 (requalified) — RNA degradosome polyphosphate kinase ppk1

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.