MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv2359 · 46 genes shown · anchor smtB · open gene page → · ← back to 1 hop

Evidence: Min score 0
zur (requalified) — zinc uptake transcriptional repressor Zur zur rpoA (family_assigned) — DNA-directed RNA polymerase subunit alpha rpoA smtB (family_assigned) — metalloregulator ArsR/SmtB family transcription fa smtB sufR (family_assigned) — suf operon transcriptional regulator SufR sufR rpoB (family_assigned) — DNA-directed RNA polymerase subunit beta rpoB rpoC (family_assigned) — DNA-directed RNA polymerase subunit beta' rpoC rpoZ (family_assigned) — DNA-directed RNA polymerase subunit omega rpoZ sigA (requalified) — RNA polymerase sigma factor sigA sigB (family_assigned) — sigma-70 family RNA polymerase sigma factor SigB sigB oxyS (family_assigned) — LysR family transcriptional regulator OxyS oxyS Rv1019 (family_assigned) — TetR/AcrR family transcriptional regulator Rv1019 kmtR (requalified) — Ni(II)/Co(II)-sensing metalloregulatory transcript kmtR embR (requalified) — response regulator transcription factor EmbR embR rpsM (requalified) — 30S ribosomal protein S13 rpsM rpsH (requalified) — 30S ribosomal protein S8 rpsH Rv2642 (family_assigned) — metalloregulator ArsR/SmtB family transcription fa Rv2642 glyS (requalified) — glycine--tRNA ligase glyS cmtR (family_assigned) — Cd(II)/Pb(II)-sensing metalloregulatory transcript cmtR Rv0081 (family_assigned) — lsr2/espR transcriptional regulator Rv0081 Rv1674c (family_assigned) — metalloregulator ArsR/SmtB family transcription fa Rv1674c sufD (requalified) — Fe-S cluster assembly protein SufD sufD Rv1465 (family_assigned) — SUF system NifU family Fe-S cluster assembly prote Rv1465 sufC (requalified) — Fe-S cluster assembly ATPase SufC sufC csd (requalified) — cysteine desulfurase csd Rv1466 (requalified) — metal-sulfur cluster assembly factor Rv1466 Rv3167c (family_assigned) — TetR/AcrR family transcriptional regulator Rv3167c sigL (family_assigned) — sigma-70 family RNA polymerase sigma factor SigL sigL whiB7 (family_assigned) — transcriptional regulator WhiB7 whiB7 rbpA (family_assigned) — RNA polymerase-binding protein RbpA rbpA helZ (requalified) — DEAD/DEAH box helicase helZ whiB1 (family_assigned) — transcriptional regulator WhiB1 whiB1 ideR (family_assigned) — iron-dependent transcriptional regulator IdeR ideR Rv1931c (family_assigned) — transcriptional regulator Rv1931c mftR (family_assigned) — mycofactocin system transcriptional regulator mftR Rv0377 (family_assigned) — LysR family transcriptional regulator Rv0377 kdpE (requalified) — two-component system response regulator KdpE kdpE Rv2282c (family_assigned) — LysR family transcriptional regulator Rv2282c Rv1152 (family_assigned) — GntR family transcriptional regulator Rv1152 Rv0038 (family_assigned) — YqgE/AlgH family protein Rv0038 Rv0653c (family_assigned) — TetR/AcrR family transcriptional regulator Rv0653c Rv1985c (family_assigned) — ArgP/LysG family DNA-binding transcriptional regul Rv1985c sirR (family_assigned) — manganese-binding transcriptional regulator MntR sirR Rv1725c (family_assigned) — winged helix-turn-helix transcriptional regulator Rv1725c virS (family_assigned) — AraC family transcriptional regulator virS Rv0894 (family_assigned) — hypothetical protein Rv0894 Rv2488c (family_assigned) — LuxR family transcriptional regulator Rv2488c

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.