MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv2239c · 46 genes shown · anchor ahpE · open gene page → · ← back to 1 hop

Evidence: Min score 0
Rv2239c (family_assigned) — hypothetical protein Rv2239c ahpE (requalified) — peroxiredoxin AhpE ahpE Rv2240c (family_assigned) — hypothetical protein Rv2240c Rv2699c (dark) — DUF4193 domain-containing protein Rv2699c frr (requalified) — ribosome recycling factor frr Rv1626 (family_assigned) — ANTAR domain-containing response regulator Rv1626 rpsA (requalified) — 30S ribosomal protein S1 rpsA Rv2867c (family_assigned) — GNAT family N-acetyltransferase Rv2867c rbpA (family_assigned) — RNA polymerase-binding protein RbpA rbpA dop (requalified) — pup deamidase/depupylase dop Rv2708c (family_assigned) — hypothetical protein Rv2708c sufR (family_assigned) — suf operon transcriptional regulator SufR sufR crp (family_assigned) — cAMP-activated global transcriptional regulator CR crp trpC (requalified) — indole-3-glycerol phosphate synthase TrpC trpC aceE (requalified) — pyruvate dehydrogenase E1 component aceE lgt (requalified) — prolipoprotein diacylglyceryl transferase lgt Rv2242 (family_assigned) — PucR family transcriptional regulator Rv2242 Rv2237A (dark) — hypothetical protein Rv2237A Rv0497 (family_assigned) — hypothetical protein Rv0497 Rv1830 (family_assigned) — HTH-type transcriptional regulator Rv1830 whiA (family_assigned) — DNA-binding protein WhiA whiA Rv2256c (dark) — hypothetical protein Rv2256c cei (requalified) — envelope integrity protein Cei cei rpsB (requalified) — 30S ribosomal protein S2 rpsB rplM (requalified) — 50S ribosomal protein L13 rplM rplT (requalified) — 50S ribosomal protein L20 rplT rplQ (requalified) — 50S ribosomal protein L17 rplQ rpsO (requalified) — 30S ribosomal protein S15 rpsO rplP (requalified) — 50S ribosomal protein L16 rplP Rv3220c (family_assigned) — histidine kinase N-terminal domain-containing prot Rv3220c atpD (family_assigned) — F0F1 ATP synthase subunit beta atpD atpC (family_assigned) — F0F1 ATP synthase subunit epsilon atpC Rv2199c (family_assigned) — cytochrome c oxidase subunit 4 Rv2199c rpsH (requalified) — 30S ribosomal protein S8 rpsH rplD (requalified) — 50S ribosomal protein L4 rplD rpsK (requalified) — 30S ribosomal protein S11 rpsK rpsE (requalified) — 30S ribosomal protein S5 rpsE rpsL (requalified) — 30S ribosomal protein S12 rpsL rpsD (requalified) — 30S ribosomal protein S4 rpsD gcpE (requalified) — flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-e gcpE rip (requalified) — zinc metalloprotease Rip rip dxr (requalified) — 1-deoxy-D-xylulose-5-phosphate reductoisomerase dxr mpa (requalified) — proteasome ATPase mpa Rv1488 (family_assigned) — SPFH domain-containing protein Rv1488 rpoA (family_assigned) — DNA-directed RNA polymerase subunit alpha rpoA rpoZ (family_assigned) — DNA-directed RNA polymerase subunit omega rpoZ

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.