MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv2175c · 46 genes shown · anchor pknL · open gene page → · ← back to 1 hop

Evidence: Min score 0
Rv2175c (family_assigned) — DNA-binding protein Rv2175c sirR (family_assigned) — manganese-binding transcriptional regulator MntR sirR pknL (requalified) — protein kinase pknL Rv1773c (family_assigned) — IclR family transcriptional regulator Rv1773c cobB (requalified) — NAD-dependent protein deacylase cobB Rv0603 (family_assigned) — hypothetical protein Rv0603 Rv1725c (family_assigned) — winged helix-turn-helix transcriptional regulator Rv1725c Rv0880 (family_assigned) — MarR family transcriptional regulator Rv0880 kdpE (requalified) — two-component system response regulator KdpE kdpE Rv3736 (family_assigned) — AraC family transcriptional regulator Rv3736 mftR (family_assigned) — mycofactocin system transcriptional regulator mftR Rv3840 (family_assigned) — transcriptional regulator Rv3840 Rv3488 (family_assigned) — PadR family transcriptional regulator Rv3488 Rv3066 (family_assigned) — TetR/AcrR family transcriptional regulator Rv3066 sigJ (family_assigned) — sigma-70 family RNA polymerase sigma factor SigJ sigJ Rv2488c (family_assigned) — LuxR family transcriptional regulator Rv2488c Rv1019 (family_assigned) — TetR/AcrR family transcriptional regulator Rv1019 Rv0273c (family_assigned) — TetR/AcrR family transcriptional regulator Rv0273c pstP (requalified) — phosphoserine/threonine phosphatase PstP pstP garA (requalified) — glycogen accumulation regulator GarA garA fhaB (family_assigned) — FHA domain-containing protein fhaB fhaA (requalified) — cell division-associated protein FhaA fhaA Rv1747 (family_assigned) — ATP-binding cassette domain-containing protein Rv1747 Rv0494 (family_assigned) — HTH-type transcriptional regulator Rv0494 Rv1776c (family_assigned) — TetR/AcrR family transcriptional regulator Rv1776c Rv0377 (family_assigned) — LysR family transcriptional regulator Rv0377 embR (requalified) — response regulator transcription factor EmbR embR Rv1931c (family_assigned) — transcriptional regulator Rv1931c nadR (requalified) — nicotinamide-nucleotide adenylyltransferase nadR nadE (requalified) — NAD(+) synthase nadE Rv1152 (family_assigned) — GntR family transcriptional regulator Rv1152 pncA (requalified) — pyrazinamidase PncA pncA nadD (requalified) — nicotinate-nucleotide adenylyltransferase nadD sthA (requalified) — Si-specific NAD(P)(+) transhydrogenase sthA tcrA (family_assigned) — two component DNA binding transcriptional regulato tcrA lpqO (family_assigned) — DUF1259 domain-containing protein lpqO cmr (family_assigned) — HTH-type transcriptional regulator Cmr cmr Rv3167c (family_assigned) — TetR/AcrR family transcriptional regulator Rv3167c virS (family_assigned) — AraC family transcriptional regulator virS Rv1724c (dark) — hypothetical protein Rv1724c sigI (requalified) — RNA polymerase sigma factor SigI sigI Rv3055 (family_assigned) — helix-turn-helix domain-containing protein Rv3055 Rv0882 (dark) — DUF2537 domain-containing protein Rv0882 Rv0881 (requalified) — RNA methyltransferase Rv0881 Rv0879c (family_assigned) — DUF2530 domain-containing protein Rv0879c Rv0744c (family_assigned) — helix-turn-helix domain-containing protein Rv0744c

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.