MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv2116 · 44 genes shown · open gene page → · ← back to 1 hop

Evidence: Min score 0
lppK (family_assigned) — hypothetical protein lppK polA (requalified) — DNA polymerase I polA Rv2090 (requalified) — 5'-3' exonuclease Rv2090 dnaA (requalified) — chromosomal replication initiator protein DnaA dnaA helZ (requalified) — DEAD/DEAH box helicase helZ ligC (requalified) — ATP-dependent DNA ligase ligC ligB (requalified) — ATP-dependent DNA ligase ligB ligD (requalified) — ATP-dependent DNA ligase ligD Rv2117 (family_assigned) — DUF503 domain-containing protein Rv2117 recA (requalified) — intein-containing recombinase RecA recA dinX (requalified) — DNA polymerase IV dinX dinP (requalified) — DNA polymerase IV dinP Rv3394c (family_assigned) — DNA polymerase Y family protein Rv3394c dnaN (family_assigned) — DNA polymerase III subunit beta dnaN Rv1277 (family_assigned) — hypothetical protein Rv1277 Rv2529 (family_assigned) — hypothetical protein Rv2529 Rv1278 (family_assigned) — AAA family ATPase Rv1278 dnaB (requalified) — replicative DNA helicase dnaB recF (requalified) — DNA replication/repair protein RecF recF parA (requalified) — chromosome partitioning protein ParA parA Rv3213c (family_assigned) — AAA family ATPase Rv3213c Rv2102 (family_assigned) — hypothetical protein Rv2102 rpoZ (family_assigned) — DNA-directed RNA polymerase subunit omega rpoZ rpoA (family_assigned) — DNA-directed RNA polymerase subunit alpha rpoA rpoB (family_assigned) — DNA-directed RNA polymerase subunit beta rpoB rpoC (family_assigned) — DNA-directed RNA polymerase subunit beta' rpoC Rv2133c (family_assigned) — SCO1664 family protein Rv2133c ligD (requalified) — non-homologous end-joining DNA ligase ligD Rv0269c (requalified) — DNA polymerase domain-containing protein Rv0269c mku (requalified) — Ku protein mku ligA (requalified) — NAD-dependent DNA ligase LigA ligA fadE22 (requalified) — acyl-CoA dehydrogenase fadE22 Rv0939 (family_assigned) — fumarylacetoacetate hydrolase family protein Rv0939 mpa (requalified) — proteasome ATPase mpa rbfA (requalified) — 30S ribosome-binding factor RbfA rbfA infB (requalified) — translation initiation factor IF-2 infB Rv2840c (family_assigned) — hypothetical protein Rv2840c recX (requalified) — recombination regulator RecX recX lexA (requalified) — transcriptional repressor LexA lexA radA (requalified) — DNA repair protein RadA radA Rv3395c (family_assigned) — hypothetical protein Rv3395c Rv3055 (family_assigned) — helix-turn-helix domain-containing protein Rv3055 Rv3054c (requalified) — NADPH-dependent FMN reductase Rv3054c dnaE2 (requalified) — error-prone DNA polymerase dnaE2

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.